RNA id: TCONS_00038660


Basic Information

Item Value
RNA id TCONS_00038660
length 955
RNA type mRNA
GC content 0.42
exon number 2
gene id XLOC_019634
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 26401332 ~ 26406304 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTAAATGAACCGAGACTTTACTGTGTGTACGTGAAAGACTCGCTAACTTTAAACAAATCATGTCAAACAGTGAAGCTTCGTCGACCTGCCCGATCCCAAGCCGCTCCATTCATGAGAAGAGCTGGTCTCCGCTTCCGGACAGTTACAGTCAGACACCAGGAGGAACTGTGTTTTCAACAACCCCCGGCGGAACTCGGATTATCTATGATCGAAAGTTTCTGCTGGAATGTCGAAACTCTCCAATCGCTCGCACCCCACCCTGCTGCCTCCCGGACATCCCAGGAGTCACCAGACCCTCACTGCAAATAATAGAGCAAGAGGAGGACAGCAAAGATCTGTCAAGTAAGAGACGCATCACTTGcattagtttgtttttttccacCTAAGAAGAACATTCAGTCTTGTACTGTCCTATCTAACATTCTCTCACGTTGTTTATTTAGGactgggtgatatggcaaaaatgcaatctcgataattattttccatattgaacgataattatatttaattcgATATCAGTTGTTAATGTTTCCCGATTTAAAAGAGTACCTCAACATTGACTGAATCTGCAAAAATTAGAGTCCATTAACTGGCGTAACATATCTTCGGCCGATAAATTTTCAGTGGCCAAAAATTTGGTGCATCTCTAATATTAAACACTCTTCCAGAttctcattgttgcacatttctgctttgTGATTGGCTGTTGGATCATTCGTTcagttattttcttttcggcttggtccctttattaatctgtggtcgccacagcaaaataaactaccaacttatccagcatacagtatgttttacacagcggatgccctaccagctgcaacccatcactaggaaacatccatacacacccattcatactcgtacactactgacaattttgcttacccaattcgcatgtaccacatgactttggacttgtgggggaaacagagc

Function

GO:

id name namespace
GO:0045947 negative regulation of translational initiation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008190 eukaryotic initiation factor 4E binding molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-041114-44 Predicted to enable eukaryotic initiation factor 4E binding activity. Predicted to be involved in negative regulation of translational initiation. Predicted to act upstream of or within negative regulation of translation. Predicted to be active in cytoplasm. Is expressed in hypothalamus and pancreas. Orthologous to human EIF4EBP3 (eukaryotic translation initiation factor 4E binding protein 3).

Ensembl:

ensembl_id ENSDART00000137312

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00038658 lncRNA downstream 8927 26251376 ~ 26395308 (-) False XLOC_019633
TCONS_00039649 lncRNA downstream 8927 26329480 ~ 26395308 (-) False XLOC_019633
TCONS_00039650 lncRNA downstream 8933 26356032 ~ 26395302 (-) True XLOC_019633
TCONS_00039648 lncRNA downstream 9006 26251376 ~ 26395229 (-) False XLOC_019633
TCONS_00039647 lncRNA downstream 149183 26251376 ~ 26255052 (-) False XLOC_019633
TCONS_00039651 lncRNA upstream 114133 26520377 ~ 26521992 (-) True XLOC_019638
TCONS_00039652 lncRNA upstream 194717 26600961 ~ 26603641 (-) True XLOC_019640
TCONS_00038668 lncRNA upstream 258770 26665014 ~ 26677834 (-) False XLOC_019641
TCONS_00039653 lncRNA upstream 414678 26820922 ~ 26824580 (-) False XLOC_019645
TCONS_00039654 lncRNA upstream 414678 26820922 ~ 26824739 (-) False XLOC_019645
TCONS_00038656 mRNA downstream 153491 26152332 ~ 26250744 (-) False XLOC_019632
TCONS_00038655 mRNA downstream 153792 26152332 ~ 26250443 (-) False XLOC_019632
TCONS_00038654 mRNA downstream 289349 26097732 ~ 26114886 (-) True XLOC_019631
TCONS_00038653 mRNA downstream 314271 26080215 ~ 26089964 (-) True XLOC_019630
TCONS_00038651 mRNA downstream 333093 26062799 ~ 26071142 (-) False XLOC_019629
TCONS_00038661 mRNA upstream 1772 26408016 ~ 26483237 (-) False XLOC_019635
TCONS_00038662 mRNA upstream 1773 26408017 ~ 26483237 (-) True XLOC_019635
TCONS_00038663 mRNA upstream 79605 26485849 ~ 26490186 (-) True XLOC_019636
TCONS_00038664 mRNA upstream 87450 26493694 ~ 26495700 (-) True XLOC_019637
TCONS_00038665 mRNA upstream 108359 26514603 ~ 26520629 (-) False XLOC_019638
TCONS_00038657 other downstream 233398 26152842 ~ 26170837 (-) True XLOC_019632
TCONS_00038640 other downstream 681443 25703078 ~ 25722792 (-) False XLOC_019622
TCONS_00038634 other downstream 779052 25620405 ~ 25625183 (-) True XLOC_019619
TCONS_00038630 other downstream 791038 25605533 ~ 25613197 (-) False XLOC_019617
TCONS_00038618 other downstream 940871 25452590 ~ 25463364 (-) True XLOC_019612
TCONS_00038671 other upstream 295577 26701821 ~ 26701954 (-) True XLOC_019643
TCONS_00038674 other upstream 511684 26917928 ~ 26918903 (-) True XLOC_019646
TCONS_00038689 other upstream 798755 27204999 ~ 27221304 (-) False XLOC_019652
TCONS_00038698 other upstream 1075905 27482149 ~ 27483038 (-) False XLOC_019657
TCONS_00038703 other upstream 1077847 27484091 ~ 27488961 (-) True XLOC_019657

Expression Profile

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