RNA id: TCONS_00039654


Basic Information

Item Value
RNA id TCONS_00039654
length 962
lncRNA type intronic
GC content 0.45
exon number 3
gene id XLOC_019645
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 26820922 ~ 26825306 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTCTCGCTCTTCTGCACCAAACATCACTGTGACATTTGGTGCAAAAGTGACTTGTGTATCTGCCAACCAAAACGTGGGCTCTCAGAGAAATTCAGCCAATAGGGGATGGGGCGTGACGTCACCGCTCTAGCGCTGCGGAGGCTGAACTTCGAAACCGAAACCCCCTTTGCGAGATTCGCCGCATCTATACCTGATTTGCGTTCAAAAATACCTGCTTAATTATTTCATAGTAGGAGCAAACATGCCTTAATAAAAGGAGCACATTTGAAACTTTAGTAACCATAAAAAGTACACCAAGTGGATGCCTTTCTACTCCAGGAAGCCGCAGCATACGGCCTGAAGGAGGAAGGACGCGGTCAGTTTGAAATAGCTGTTGTGATGGAGCTGAACCTGTAGACAAGGGAACTAACACATTTGAGGTAAAAAGAATCCAAAATAAGAGATTGGTGTGTGTGGTGAGGGTAAAGAAGTCCACAGCAGCATCCTGGAAATGCTGtaatgcaggggtgcccaaacttagtTCTGGACGGCTGGTGAAGTTTAAAGTCAACTTCAACTAAACTCTGCAAGACAGCAGCAGTTCTGGACTGAGTTTGGCCAGTCCTGTTCTCCTGTAGTCAATTGAACGAGACCCTGCATCAGTCCACCTGCCCTTGTGTCCTCATCTGGACCAGATATTGCTGTGGCCTCTTTATCGTCCATATCTCGGGCATGGACTGCCATGCATCACCGTCCTGTTTCAGTCTGACTGCAGCAATGAGGGATGTGATGATGGCGAACTCCCTCTGATAATCTGCAGAACTGGCCCAGCTGTGTGGAGATGCAGCAAAACATGGGCCTCTGTCTGTAATACATCACTGTTAGAATAAAGCTTGGTTTCATGTGTTGTTGACATGTATTTATTTGTCATGATTACTTATATTCATTcttttaataatatgaatatgtttgttttcaata

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00038668 lncRNA downstream 143088 26665014 ~ 26677834 (-) False XLOC_019641
TCONS_00039652 lncRNA downstream 217281 26600961 ~ 26603641 (-) True XLOC_019640
TCONS_00039651 lncRNA downstream 298930 26520377 ~ 26521992 (-) True XLOC_019638
TCONS_00039649 lncRNA downstream 425614 26329480 ~ 26395308 (-) False XLOC_019633
TCONS_00038678 lncRNA upstream 177870 27002609 ~ 27010789 (-) True XLOC_019647
TCONS_00039656 lncRNA upstream 363385 27188124 ~ 27191434 (-) True XLOC_019649
TCONS_00038687 lncRNA upstream 380162 27204901 ~ 27208625 (-) False XLOC_019652
TCONS_00038695 lncRNA upstream 582743 27407482 ~ 27413270 (-) True XLOC_019655
TCONS_00038697 lncRNA upstream 616986 27441725 ~ 27443605 (-) True XLOC_019656
TCONS_00038672 mRNA downstream 105652 26709801 ~ 26715270 (-) True XLOC_019644
TCONS_00038669 mRNA downstream 128963 26678484 ~ 26691959 (-) False XLOC_019642
TCONS_00038670 mRNA downstream 128963 26683321 ~ 26691959 (-) True XLOC_019642
TCONS_00038667 mRNA downstream 143088 26665014 ~ 26677834 (-) True XLOC_019641
TCONS_00038666 mRNA downstream 262654 26555989 ~ 26558268 (-) True XLOC_019639
TCONS_00038673 mRNA upstream 83888 26908627 ~ 26918901 (-) False XLOC_019646
TCONS_00038675 mRNA upstream 171537 26996276 ~ 27010796 (-) False XLOC_019647
TCONS_00038676 mRNA upstream 171537 26996276 ~ 27010837 (-) False XLOC_019647
TCONS_00038677 mRNA upstream 171682 26996421 ~ 27010803 (-) False XLOC_019647
TCONS_00038679 mRNA upstream 222594 27047333 ~ 27185915 (-) False XLOC_019648
TCONS_00038671 other downstream 118968 26701821 ~ 26701954 (-) True XLOC_019643
TCONS_00038657 other downstream 650085 26152842 ~ 26170837 (-) True XLOC_019632
TCONS_00038640 other downstream 1098130 25703078 ~ 25722792 (-) False XLOC_019622
TCONS_00038634 other downstream 1195739 25620405 ~ 25625183 (-) True XLOC_019619
TCONS_00038630 other downstream 1207725 25605533 ~ 25613197 (-) False XLOC_019617
TCONS_00038674 other upstream 93189 26917928 ~ 26918903 (-) True XLOC_019646
TCONS_00038689 other upstream 380260 27204999 ~ 27221304 (-) False XLOC_019652
TCONS_00038698 other upstream 657410 27482149 ~ 27483038 (-) False XLOC_019657
TCONS_00038703 other upstream 659352 27484091 ~ 27488961 (-) True XLOC_019657
TCONS_00038710 other upstream 1121535 27946274 ~ 27946391 (-) True XLOC_019661

Expression Profile

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