Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_019626 |
| gene name | zgc:112437 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007132.7 |
| NCBI id | CM002905.2 |
| chromosome length | 45934066 |
| location | 25773530 ~ 25774605 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0070830 | bicellular tight junction assembly | biological_process |
| GO:0007155 | cell adhesion | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005923 | bicellular tight junction | cellular_component |
| GO:0030054 | cell junction | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005198 | structural molecule activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050417-293 | Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in central nervous system; gut; otic vesicle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in ovarian cancer and pancreatic cancer. Orthologous to human CLDN4 (claudin 4). |
| ensembl_id | ENSDARG00000009215 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00038646 | True | 1076 | mRNA | 0.45 | 1 | 25773530 | 25774605 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_019625 | cldnc | coding | downstream | 17411 | 25754268 ~ 25756119 (-) |
| XLOC_019624 | CR388166.2 | coding | downstream | 24603 | 25747063 ~ 25748927 (-) |
| XLOC_019623 | cldnh | coding | downstream | 32119 | 25739295 ~ 25741411 (-) |
| XLOC_019622 | abhd11 | coding | downstream | 50696 | 25703078 ~ 25722834 (-) |
| XLOC_019621 | phkg1b | coding | downstream | 87762 | 25676097 ~ 25685768 (-) |
| XLOC_019627 | mettl27 | coding | upstream | 21270 | 25795875 ~ 25801956 (-) |
| XLOC_019628 | sdf2 | coding | upstream | 246891 | 26021496 ~ 26028205 (-) |
| XLOC_019629 | rab34b | coding | upstream | 287847 | 26062452 ~ 26071773 (-) |
| XLOC_019630 | tlcd1 | coding | upstream | 305610 | 26080215 ~ 26089964 (-) |
| XLOC_019631 | nipal4 | coding | upstream | 323127 | 26097732 ~ 26114886 (-) |
| XLOC_019609 | BX510938.1 | non-coding | downstream | 395519 | 25376752 ~ 25378011 (-) |
| XLOC_019606 | NA | non-coding | downstream | 546642 | 25216390 ~ 25226888 (-) |
| XLOC_019603 | NA | non-coding | downstream | 1087315 | 24679050 ~ 24686215 (-) |
| XLOC_019600 | CR936479.1 | non-coding | downstream | 1863327 | 23845537 ~ 23910203 (-) |
| XLOC_019597 | NA | non-coding | downstream | 2619008 | 23146291 ~ 23154522 (-) |
| XLOC_019633 | NA | non-coding | upstream | 476771 | 26251376 ~ 26395308 (-) |
| XLOC_019640 | NA | non-coding | upstream | 826356 | 26600961 ~ 26603641 (-) |
| XLOC_019643 | BX465841.1 | non-coding | upstream | 927216 | 26701821 ~ 26701954 (-) |
| XLOC_019645 | NA | non-coding | upstream | 1046317 | 26820922 ~ 26825306 (-) |
| XLOC_019649 | NA | non-coding | upstream | 1413519 | 27188124 ~ 27191434 (-) |
