RNA id: TCONS_00038643


Basic Information

Item Value
RNA id TCONS_00038643
length 652
RNA type mRNA
GC content 0.50
exon number 1
gene id XLOC_019623
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 25739295 ~ 25741411 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAAAATGTCGATGGGACTGGAAATTGGGGGCATTGCCCTGGGTATTATTGGTTGGATAATTAGCATTGTGGCTTGTGCTCTTCCCATGTGGCGTGTCTCGGCCTTCGTTGGCGCCAACATTGTCACGGCGCAAGTAATGTGGGATGGTTTATGGATGAACTGTGTCGTTCAGAGCACTGGACAGATGCAGTGTAAGGTCTACGACTCAATGCTGGCTTTAGGTCAAGATCTGCAGGCGTCCAGAGCCATGACTGTCATTGCCATCATCTTGGCTGTTCTAGGTGTGATGATCTCCGTCATGGGCGCCAAATGCACCAATTGTATTGAGGATGAAGGTGCTAAGGCTAAAGTGATGATCGTCTCTGGCATCATGTTCATTATTGCTGGCATCCTGGATCTCATTCCTTCAGCCTGGGTGGCAAACCAGATCATTCGGGACTTTTACAACCCGTTACTGCCCGGCGCTCAGCAAAGAGAGCTCGGGGCATCCATTTACATAGGTTTCGCTGCTGCCGCTCTCTTAATCATTGGAGGAGCCATGCTGTGCTGCACTTGTCCTCCAAAAGAGAAGAAGTACAAGCCGGCAAGAATGGGCTATTCTGCTCCACGCTCAGCCAGCGCTGGATATGACAAGAAGGACTATGTTTAAATc

Function

GO:

id name namespace
GO:0070830 bicellular tight junction assembly biological_process
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010328-8 Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in several structures, including brain; integument; pleuroperitoneal region; prechordal plate; and sensory system. Orthologous to human CLDN3 (claudin 3).

Ensembl:

ensembl_id ENSDART00000181756

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00038628 lncRNA downstream 138836 25599088 ~ 25601609 (-) True XLOC_019616
TCONS_00038626 lncRNA downstream 142868 25595716 ~ 25597577 (-) False XLOC_019616
TCONS_00038612 lncRNA downstream 362434 25376752 ~ 25378011 (-) True XLOC_019609
TCONS_00039645 lncRNA downstream 513557 25221951 ~ 25226888 (-) True XLOC_019606
TCONS_00039644 lncRNA downstream 517925 25218897 ~ 25222520 (-) False XLOC_019606
TCONS_00039646 lncRNA upstream 6080 25747176 ~ 25748927 (-) True XLOC_019624
TCONS_00038648 lncRNA upstream 55242 25796338 ~ 25799633 (-) True XLOC_019627
TCONS_00038652 lncRNA upstream 325914 26067010 ~ 26067893 (-) True XLOC_019629
TCONS_00039647 lncRNA upstream 510280 26251376 ~ 26255052 (-) False XLOC_019633
TCONS_00039648 lncRNA upstream 510280 26251376 ~ 26395229 (-) False XLOC_019633
TCONS_00038641 mRNA downstream 17611 25704324 ~ 25722834 (-) True XLOC_019622
TCONS_00038637 mRNA downstream 54677 25676097 ~ 25685768 (-) False XLOC_019621
TCONS_00038639 mRNA downstream 54706 25685141 ~ 25685739 (-) True XLOC_019621
TCONS_00038638 mRNA downstream 55023 25676855 ~ 25685422 (-) False XLOC_019621
TCONS_00038636 mRNA downstream 70625 25664393 ~ 25669820 (-) True XLOC_019620
TCONS_00038644 mRNA upstream 5967 25747063 ~ 25748913 (-) False XLOC_019624
TCONS_00038645 mRNA upstream 13172 25754268 ~ 25756119 (-) True XLOC_019625
TCONS_00038646 mRNA upstream 32434 25773530 ~ 25774605 (-) True XLOC_019626
TCONS_00038647 mRNA upstream 54779 25795875 ~ 25801956 (-) False XLOC_019627
TCONS_00038649 mRNA upstream 280400 26021496 ~ 26028205 (-) True XLOC_019628
TCONS_00038640 other downstream 17653 25703078 ~ 25722792 (-) False XLOC_019622
TCONS_00038634 other downstream 115262 25620405 ~ 25625183 (-) True XLOC_019619
TCONS_00038630 other downstream 127248 25605533 ~ 25613197 (-) False XLOC_019617
TCONS_00038618 other downstream 277081 25452590 ~ 25463364 (-) True XLOC_019612
TCONS_00038597 other downstream 1993498 23552023 ~ 23746947 (-) True XLOC_019599
TCONS_00038657 other upstream 411746 26152842 ~ 26170837 (-) True XLOC_019632
TCONS_00038671 other upstream 960725 26701821 ~ 26701954 (-) True XLOC_019643
TCONS_00038674 other upstream 1176832 26917928 ~ 26918903 (-) True XLOC_019646
TCONS_00038689 other upstream 1463903 27204999 ~ 27221304 (-) False XLOC_019652
TCONS_00038698 other upstream 1741053 27482149 ~ 27483038 (-) False XLOC_019657

Expression Profile

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