XLOC_019674 (timd4)


Basic Information

Item Value
gene id XLOC_019674
gene name timd4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 29090652 ~ 29100110 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038732
GGAGATGTCACAGAGCTGGAGAACACAGCCGCTCATTCACATGCCCTCCTCTGCTTCACCCTGGTGCTGGCCAGCGCAAGGCAGTGTCGCCTGAACACCACAGCGGCCGGTCACAATGATTACTCCTCCCCGGTTAACTGCACTGCGCTGGATGTTCCTGCTCACCATTTCAGCTGGCATTTCCCCCATCTTGGCATTTCATGTGACGGAGGGAAGCACAGTGATTTTATCATGTCATTATTCTGTGAAGCACCACGGTCTGAGCCACGTCTGCTGGGGTAGAGACTGCGGGACTTTTTGGTGTAACGACATCATTGTTCAGACAGATGAGTACGGCGTGATCTCCAAAGTCTCGGACAGGTACCGGCTCATCGGGGATGTGATGTTGGGACAGATGGACTTGGGGATCCAAAAGATACAGAAGTCGGACAGTGGGCCCTACTGCTGCAGAGTGGACATAGAGGGCTTCTTTAATGATAAGAAGATGTCCTACACGCTACAAGTCATGAAAGcCCCAACAACTGTGGCTCCAAAAACTACTACACAAATTACAACAGAACCAATGGAAACACAGACAGCATCTCTATCAGATCCGTCCAGAGGAGGAGACTCATCACTCAATGACATTTCCTGGCAGAACGAAACTCATGTGCATTCAGGGGCAATGATGGAGGAGCCGATCTCTAGGATCATGCTGCAGATTAACATCCCGGTGTTGTCTCTGTCTCTCAGTCTGCTTCTGGTTCTTTTGGGTGCTCTGGCCCTTTTGACCTTCAAACGTGGCTTTTATGGGAAGGCATTAGACAGTGGGTGTTTCTCAAAGGAGCCCAGACACATTATTTATGAAATACGCACAAGAAGACCAGTGGAGGAGAACATCTACACCCTggagtaaaaacaaaacatgactaATTCTCAACTTAAGCCCCAAAATGGAAATGTTCTCATCATTTACACAACCTCAAGTATTTCCAAACCTTTAaaagtttcttccttctgttgaatgTAAAAGTAGATAATTCAAAGAAAACTGAACACCTATAACCACcaaacttccatagtaggaaaaacaaacacggAGTATATCCGTTATCAGCTTTCTTCATAATatattcttttatgtttaacagaaaagtAAACGGAGAGTAAATgaggacagattttttttatttttggatgaattatccctttaatacgTATACATATTTATAGTATTCTTTATTATTCATAACGGTATACATAAACGAGTGCAACTGGGGCTGTCTTTTTTGCGTATAaaatacacatatttaaaaaaatgatgactGATGTTACATTTCTGTGCGAAGCATATCTTTAAATATGTAAACTCATGTAAAGTTGTACAAATTGAAGAAAGTATATATCCTTCacgttaaaaataaaactgcaataTTGTCTTTTGT
>TCONS_00038734
TCCAGAGGAGGAGACTCATCACTCAATGACATTTCCTGGCAGAACGAAACTCATGTGCATTCAGGGGCAATGTCTGCTTCTGGTTCTTTTGGGTGCTCTGGCCCTTTTGACCTTCAAACGTATGTATTGCCCTCAGCTATTATTCTACTGGACATTGAAAAAGTTCACTTCCAGAATGATTGGTCAGCATTGACATCTACTTGTTTTCCATATTCTCCCCATATATGTAAATGAATGGTAACCATAAACCTTTCGgaaaccaacatttttcaaatatcttttgtgggtcccactttatattagatggccttaactaatatgattttacactgaaattaatcatttttttaccATGTGTTTactgtgtaaatatttttttgtttacattatacGTAATTGCATCTGTTAACTTctatatttacatttgtaattgaccatcccttacaccagtggtcaccaaacttgttcctggaggg
>TCONS_00038733
TGCTGGGGTAGAGACTGCGGGACTTTTTGGTGTAACGACATCATTGTTCAGACAGATGAGTACGGCGTGATCTCCAAAGTCTCGGACAGGTACCGGCTCATCGGGGATGTGATGTTGGGACAGATGGACTTGGGGATCCAAAAGATACAGAAGTCGGACAGTGGGCCCTACTGCTGCAGAGTGGACATAGAGGGCTTCTTTAATGATAAGAAGATGTCCTACACGCTACAAGTCATGAAAGcCCCAACAACTGTGGCTCCAAAAACTACTACACAAATTACAACAGAACCAATGGAAACACAGACAGCATCTCTATCAGATCCGTCCAGAGGAGGAGACTCATCACTCAATGACATTTCCTGGCAGAACGAAACTCATGTGCATTCAGGGGCAATGATGGAGGAGCCGATCTCTAGGATCATGCTGCAGATTAACATCCCGGTGTTGTCTCTGTCTCTCAGTCTGCTTCTGGTTCTTTTGGGTGCTCTGGCCCTTTTGACCTTCAAACGTATGTATTGCCCTCAGCTATTATTCTACTGGACATTGAAAAAGTTCACTTCCAGAATGATTGGTCAGCATTGACATCTACTTGTTTTCCATATTCTCCCCATATATGTAAATGAATGGTAACCATAAACCTTTCGgaaaccaacatttttcaaatatcttttgtgggtcccactttatattagatggccttaactaatatgattttacactgaaattaatcatttttttaccATGTGTTTactgtgtaaatatttttttgtttacattatacGTAATTGCATCTGTTAACTTctatatttacatttgtaattgaccatcccttacaccagtggtcaccaaacttgttcctggaggg

Function

symbol description
timd4 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain. Orthologous to human TIMD4 (T cell immunoglobulin and mucin domain containing 4).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080303-10 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain. Orthologous to human TIMD4 (T cell immunoglobulin and mucin domain containing 4).

Ensembl:

ensembl_id ENSDARG00000077257

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038732 False 1424 mRNA 0.42 7 29090652 29100110
TCONS_00038734 False 476 lncRNA 0.37 2 29092149 29094693
TCONS_00038733 True 865 lncRNA 0.42 4 29092149 29096762

Neighbor

gene id symbol gene type direction distance location
XLOC_019673 CR759846.1 coding downstream 137666 28946015 ~ 28952986 (-)
XLOC_019672 cxxc5a coding downstream 170407 28863121 ~ 28920245 (-)
XLOC_019671 BX511240.1 coding downstream 306708 28783827 ~ 28783944 (-)
XLOC_019669 nrg2a coding downstream 353331 28554716 ~ 28737321 (-)
XLOC_019670 NA coding downstream 358981 28729172 ~ 28731671 (-)
XLOC_019675 havcr1 coding upstream 862 29100972 ~ 29110607 (-)
XLOC_019676 havcr2 coding upstream 11943 29112053 ~ 29119560 (-)
XLOC_019677 si:ch211-57b15.2 coding upstream 89361 29189471 ~ 29197700 (-)
XLOC_019678 NA coding upstream 194311 29294421 ~ 29295713 (-)
XLOC_019679 BX537120.3 coding upstream 225434 29325544 ~ 29364166 (-)
XLOC_019668 NA non-coding downstream 536739 28549749 ~ 28553913 (-)
XLOC_019666 NA non-coding downstream 585957 28493077 ~ 28504695 (-)
XLOC_019685 CR762480.2 non-coding upstream 633326 29733436 ~ 29979758 (-)
XLOC_019686 NA non-coding upstream 653110 29753220 ~ 29754550 (-)
XLOC_019689 CU855895.1 non-coding upstream 898451 29998561 ~ 30002910 (-)
XLOC_019695 BX510945.1 non-coding upstream 1032558 30132668 ~ 30132783 (-)

Expression


Co-expression Network