LOC110529430 (LOC106574078)


Basic Information

Item Value
gene id LOC110529430
gene name LOC106574078
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15117850 ~ 15126002 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110529430
AACAGCGCCACAATCAATTTACATTCGATTTATCACAATGACCGTTTGTGTTTAACAACGTGGAAAGTGATTCATTACATACGACTttcgttttttttgttgctatcaATTGAAGTTAAATATTAGCGAAACTAGATTGATACATTGTGGATTTAACGCGAATATGGCCGCTCTGATATTGCGGAGGAAATCTTGAAACCACTGCTCGAGTAACATTACAGTTCTCACAACATTTCAGCCAGCCAATACGACTCCGCGGCACGCAAACCGAAATGATAGCTAACGCGTTAGCTGCCTGGCTTGCTATTtagttatttagctagctaactaactatctGATAAGCTAGCTACGTTTGGTGAAGAAGATTACTGTCTGTGCTATGTGGTCATAACTAGGGCTGACTAATAGAAATGAGTTTAAGTGAATTTGAAAGGACAGTCATCTCACGTCCTGGCCAAACCAGAGAATCTGAAAATGACAACAAGGTCATCAGAGAACGCTCTTGCTGCCATCACCTTCCCCAAATCCAAATTAGCCCTATGGGACCCCACATCTAATGGGGATGTGATTAGCCTCCACCTATCCTATTACAGAAATCCCAGACTACTTCTGGTGGAGAGTTCTTCGTTTGGCCCACCGGCATTCCAGAGAGAATAACAAGCCCCAGTTCAGCTGTTACTTGTTGGGGACTATTGCTGTGGATTCTGATGAAGAAGAGGGTGTGACTTTGAACCGGTTTGACCTGGGCCAGGAGCAACCTGGTTCCTCTGAAAAGGTCCCCACTGCCCTGATGCCTGGAGACATCCTGGTGCTGTGTGTATTTGGAACCCAGGGGGTCGCTGCCACAGACACCATGGTTCACTCTGCAGAAGACTTCCACATCTCTTTCAAGGTAACATTAATGTGTAAACGTCTTCACTTAAAATGCACCTGGGAGTCCCTGGACCTGTCCAAGCTGCTGGTCCTACGAGCACACCGTGGCTGCTCCCAGCAAACAGACAGCCTGAGCTTCTGCCTGCGCTGGGCCGCCGTCACCCCCGGTAACACACTGGACGCTGTGCCCATTCGACCCGTGCTCATCACCCCCACGGCCTTGGCCAGGAATCTGAGCGGGCCGACCAGCCTCGCCCAGCCGCTACACAGCAGCGCTAGCCACAAACGAGACTTTCTGACAATGGATCAAAGCAGGAAACTGCTCCTAATACTGGAGTCTGACCCAAAGGCCTACACTCTACCACTGGTGGGACTATTGCTGAGTGGGGTCAACCACATCTCCAACCCCAGGTGTGGTGTTTGAGGTACCTGTTCAGCTCCTCTCTCCAGGACAAGGTAACGTCAGAGGGCGGTGCGTTCCTGGTGGTGTTGTACCCGCTGACCCACAGGGAGCCAGCATTCTACCAGGTCCAGCCCTGCAGGGGTCAGCAGCAGGACATGACCTTCCAACTGCTCACTAGCACCGTGTCACTCACCCTCTACAAGAATGTGGAGGAGTCTGAGGGCCATACTCTGCAGTTTGAGCTCAGTGCTGAGAGCCAAAACATAGAGGCTGAGTTCTTCAGGGAACTGGTGTCCCATGCCTCCTTCACAAGCTCTTCTCTCAAACTTCTCCCTGCGGTAGTGGCAGCATCTCCTCAGAACAGACTGTCTATCAACAACCATGACTCTGGAGTAGAGGACGATGACCTCTCCCCCAGGCCCTCCCCAAACCCCCACCCTCTCACCCAGCAGACCAAGCGGGTCCACCGTCCTGTGCCGGAGCTCTCCATGGTGATGGGCGGCAGCTTCCTTGATGGAAAGACCATGGGCCCCACTCATCCTTCCCCCGCAGCTCTGCAGCCTAGAGGCAGTTGCCCCCCCTCCCACCAGCTCCAACCTGGGGCAACCAGACACCCAGATCAGGGGCCCACCACACTCAGTGGCCCCCCACCCATCAGAAGGCCCCTGACCCCCACCATGGACACTCTGGGTAAGGGCAGCAGAACAGGCTCCTCGCCTAATGGATCAGTCCACCAGGCCAGGCAGTTCCACCAAGCACCAGGTCCCCTCTCTCACAAGTGGGCCGCCCCTGTTGGAGCCCCTCCACACCAGAGCCCCGGTCACCCCTCAGCCCCCATGCCCACTCACCAACAGCCCGCTTCATGTTACCCCCCCTGTACCACCCCAACTACTGTCAGGGAGCTTCATGCACCCACAACAGACCAGATAGACACTTCTGTTCCAACTTCGATGGTAACCCCCCCACCTCTCACATTTCCCCTTCCCACCAAACACACCCTCACCACAGCTCATTGTGCCACCCCATGGGGCCCACACTTACACCATTTCACCGCCCAGGGGCCCTGCTTGGAGCGGCCAACCCCTGTCTGTCAGAACCAGTGTTGCCAGCCCGAGTCAGCAAAGTCTCCCCCCCCCTGGATGGGCCCATGGGCCTCCTGCCCTCTGACACCTACAGAATCCTGGTGGACCAAGACCGGCAGCTCAACTTACTGCAGGCACAGATCCAGAAGCTACTGGCGGCTCAGGGGAAAGGGGGGAGCAGCTCCTCTCCATCCACTGAGCAGGCAGCCATGCAGACACAGATCTCCCCAGGAAAACACACTAGGAGGATTGTCAGCATCGCTGTAGGAACAGGTGCCAGTTTGTTCTGGGGAAACCCCATCGATGCCCCCGCTTGTGATGAGGACGAGCGCCAACAGCCAGAGTGGCACACGGACAGGGGGCCTGGCACCACCGATGGTAGCAGGTCCTCCTCTGGTCGGAGTTCTGGCAGTGCCAGCCTCACCCACAGCAGGCACATGAATGGCACGGAAGACGAGAGTGGGTGTAGTGAGGGACATGTGAAAAGCACACCCTTCAACCAGTCAATGCACGGCCAAGTGAACAGCCGTCTCCAGGGTACAGTGAACGAGGAGGGTGAAGATGAGGAGGAACAGGACAGGCGGACCTCATACCCACGGCAGAAGAAACACCTTGTCCCTCTGTCAGTCCCAGCAGTCCCCAGAGAGCAGCCGCCAGGAGGGAAGGATCAGGTGCTCCACGCCACACTGCGCCAGCTGCAGCAGCTAGGGGTCCATGTGGATGTAGACTCTGCTGACTCGGGAGGCAAGGTCACACGCAGCTCAATGGAGAGTGCCAGTACCCTGGCCGGCATCAACCCAGAGGCAGTCATCAGCAGACTGACCCTCCTGGAGTCCACGGGAACCAGCATGTGTGGCCCCAGTGGCAGCGTGGACCTCAGTCTGGAGGCCAATGCCATCGCCCTCCGGTACCTCAGCGACCAGCAGCTCTCTAGACTTTCTGTGGgggagtggggtggggtggggggggcaacAGCCCCCTATGGCGCGTTGGCTTcaaaacagcgccccctgtcagacatctagtgtatatataaatctcAGCGGATGGAAACCAAGTTGCAGGcaggattttttggggggtgcaATCATGCCCCCTACTGCTCACATATAGATAGATACACGCACATgcattagttaaataaaggttaaataaaaacaaatgtaaaaaacatGCATGAGTCCTTAGTATATACTTAAtttcaaaattcaaaaggcactcgcacatctgagctatcttttttgcaggtgcatggtaacagttgaacaAGATGAGGAAAAAAGAAGGAACCCGCACACTGCTTGTGAGAATATCAAATCGAatggtattagtcacatgcgccaaatacaaatacaaagtgtagaccttacagtgaaatgcttactcacgagcccctaaccaacaatgcagtttaaagaaatatggatgagaaaaataaa

Function

NR:

description
SCL-interrupting locus protein

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process
GO:0070050 neuron cellular homeostasis biological_process
GO:0051225 spindle assembly biological_process
GO:0010171 body morphogenesis biological_process
GO:0007052 mitotic spindle organization biological_process
GO:0005515 protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110529430 True 3798 mRNA 0.54 19 15117850 15126002

Neighbor

gene id symbol gene type direction distance location
LOC110487930 LOC106574072 coding upstream 37546 15075184 ~ 15080304 (+)
elav1 elav1 coding upstream 91315 15024419 ~ 15026535 (+)
LOC110487655 LOC106574076 coding upstream 98758 15016138 ~ 15019092 (+)
LOC110487584 LOC106574067 coding upstream 114423 14993937 ~ 15003427 (+)
LOC110486505 LOC106574055 coding upstream 622002 14350545 ~ 14495848 (+)
LOC110488062 LOC106613585 coding downstream 4524 15130526 ~ 15159472 (+)
LOC110488261 antithrombin coding downstream 37314 15163316 ~ 15171415 (+)
LOC110529632 dph5 coding downstream 66647 15192649 ~ 15241166 (+)
LOC110489303 dbt coding downstream 299120 15425122 ~ 15432764 (+)
LOC118966767 NA coding downstream 305507 15431509 ~ 15431641 (+)
G13774 NA non-coding upstream 17663 15099934 ~ 15100187 (+)
G13772 NA non-coding upstream 20165 15097473 ~ 15097685 (+)
G13769 NA non-coding upstream 22674 15094962 ~ 15095176 (+)
G13768 NA non-coding upstream 23450 15094122 ~ 15094400 (+)
G13767 NA non-coding upstream 23750 15093836 ~ 15094100 (+)
G13806 NA non-coding downstream 71562 15197564 ~ 15197840 (+)
G13807 NA non-coding downstream 72130 15198132 ~ 15198454 (+)
G13820 NA non-coding downstream 99725 15225727 ~ 15225937 (+)
G13823 NA non-coding downstream 102629 15228631 ~ 15228879 (+)
G13827 NA non-coding downstream 104996 15230998 ~ 15231515 (+)
G13639 NA other upstream 155847 14961554 ~ 14962003 (+)
G13434 NA other upstream 305226 14811771 ~ 14812624 (+)
G13391 NA other upstream 417120 14700176 ~ 14700730 (+)
G13381 NA other upstream 437823 14679698 ~ 14680027 (+)
G13380 NA other upstream 438272 14679350 ~ 14679578 (+)
sass6 sass6 other downstream 333902 15447458 ~ 15468011 (+)
LOC110490510 LOC106573976 other downstream 569039 15694810 ~ 15716774 (+)
LOC118941201 NA other downstream 1453084 16578956 ~ 16592967 (+)
LOC110492606 LOC106573909 other downstream 1790497 16916482 ~ 16920945 (+)
LOC110492876 LOC106613263 other downstream 1837055 16962997 ~ 16967790 (+)

Expression


Co-expression Network