LOC110522092 (lrrc17)


Basic Information

Item Value
gene id LOC110522092
gene name lrrc17
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 36005053 ~ 36045196 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600198.2
tctctccctttcagagccagagagagaacctTTCTCATTCCCCAGGGTCAACATAGACTTGGAGAGGAGCACACAAACTGACTCCAGTGCAGCCAGGGGGCAGAGGACACAGATGTGTTGGAAAACTGATCTGGATATAGTTAAAGCAGATAGAAGAGGAGACATATGGATCAGAGAGGACCGCAGAAACTGAACTGAGTGCAGCCGGAGAGATTGAGGTGGATGAGCTTGTGGCAGCCCTTCCCTTTGGCCAGgaacAGCAGCTGTATCCCATTATATCAGACACTGTCAACATGCAATCCTCCACTCCCATTTTCCAGTAAAACCTCCACTCCACCCACTGCTTCGCTCCAGCTATCACCAGCGAGAGGCAGCCCCAGCTGGGCTGAGGATGCgtgtgacctcccctctcctcctggcTCTCCTAGTACTCCTGCTGCTCCCATCACCCTCCCAGCTGAGGAAGGCAGGCCAGGGCAGGCGGCTCAAAGTAGGCAGACGCCTCCTCAGACGGGACAGGGTGAGAGGTCAGGGGCGCCAGGGCAGGTCAGGAGACTCCAGGCATCAGGTCCCTGAATGCTCAGAGTACAGCGACTCTGAAGACCTCTTCGTGGACTGCCAAGGGAGAAAACTTTCCTCCATCCCCATTGCCTTATCCTGGTCACGGGCTCCAGACCACCTCCTGCTGGCCCGTAACCGTATCCGGGTCCTCCACGACGGGGCCTTCTCTGGCTTCGAGGGCCTGAGGAGCCTGGACCTGCAGCAGAACCGGATCTCAGTGTTGGAGGAGGGGGTGTTCCTGGGCCTGATACACCTCACCACCCTTCTGCTGCAGCACAACCGTCTGGGCACGCTCAGCGAGGAGGCTCTCATCCCCATGCCAGCCCTGCGCTACCTGCGTCTCCATGACAACCCCTGGAGCTGCCGCTGCACACTCGACAGTCTGGTTCGCACCCTGCAGGTGCCCAGCAACCGTAACCTGGGGAACCATGCCAGGTGTGCGGAGCCAGTTGGGCTGAGGGGCAGGAAGCTGAGACAGGTGGACCCAGAGCTGCTGTGTCTGGAGCTGGAGCCTCCCAGCGACCCCCCAGACCCACAGGGGGAGGACCAGAGGGACTCCACATACCCTCTGCAGCCCATCCCCATCAGGGGCAAGCCTGACGCCACCACCTCCTGCCATACCTACCTGTTCCCCACACCCCGACTGGACTGCAGAAGCAGAGATCTGGCGGAGGTACCTGCAGACATCCCAGGGGACATGGTTCACATGGACCTGTCCCAAAATTCCCTCCGGCGCCTGAAGGCCAGAGACTTTGTGGAGGCCAGAAGCCTAAGGTCACTCAATCTCAGCGACAACAACTTGGAGGACATggacacagcCTCCCTGTCTGGCCTTCTCCACCTCCATGAGTTGGACCTTTCCAACAACAACCTGCACTTCTTCCACTATGGTGTTCTAGAAGACCTCTATTTCCTGTCCCTGCTAAGGTTGGGGGGAAACCCCTGGGTCTGTGACTACAGCATTCACTACCTGGTGTACTGGCTACGTCTGCACCCAGGGGTGACCCACTCTGGCCTGCTGTGCCACTCCCCTCCTGAGCTCAGAGGAAAGAGTGTGGAGGACTATGTTCACTCCTACAACAGAGCCTGCAGCCAGACAGAGCACAGTCAGACAGAATACGGCCAGACAGATCCAGAATTGTGGGTCACATCTATGGAGCTGCAGGAGGAGATGGAACCGGCACATCTGAGAGGACCGCAGAAATACCACGTCACCAGGGCACTAAAACTCCTCTCAGCCTCTACAGAGGAGGAAGGGACGACCAGCAGAAGCCTTAATAAAGCTTCCACTTGACTGAAGAGACCTCTGGCTCCATTTCCTGAATAATGCTAGCAACAGCCGAGCTCATTTGATATGTGTAATTAGCCCCAAACATGGCCAGCTGCACCTGCAGTAGTCTTGAATTAAATTCAGGATACTCATCTACCACCTTGTCCATGTCTCCGCGTAGCAGCACATTTTCAAGCTGCTGCAGCTTGTGGAATCCAGCTTGATCAAACCTCTAAATTGAGTTTTCACTGTGTCCAAGGCGTTGTAGAATTGGGCTCTGTACAGACTGGGCATCCGGATGGATATGGACCACAGCCTGACTGGTGTAACGCTTTGTAGGCTTGCGGATAGAAGACTCTTAACCATCAATATTTGCACGATCTGATATCTCCGTCTTGGTGTTGTTCCTAAGACATAATGTTTCTCCTGGACCATCATTGCAACTGACCTGTAGTTAGTTGGTTACCCCAGTCCAAAGACAGAATATTCCCTTGCGCCCCACCCtttgacctaaccctaacctcaggTTAAGACACAGGTGCCAGCCACTAAGCTCAGTTGTGCCAACATTAATTATGTCGTAGGAACAACACCAA
>XR_002473256.2
ctctccctttcagagccagagagagaacctTTCTCATTCCCCAGGGTCAACATAGACTTGGAGAGGAGCACACAAACTGACTCCAGTGCAGCCAGGGGGCAGAGGACACAGATGTGTTGGAAAACTGATCTGGATATAGTTAAAGCAGATAGAAGAGGAGACATATGGATCAGAGAGGACCGCAGAAACTGAACTGAGTGCAGCCGGAGAGATTGAGGTGGATGAGCTTGTGGCAGCCCTTCCCTTTGGCCAGgaacAGCAGCTGTATCCCATTATATCAGACACTGTCAACATGCAATCCTCCACTCCCATTTTCCAGTAAAACCTCCACTCCACCCACTGCTTCGCTCCAGCTATCACCAGCGAGAGGCAGCCCCAGCTGGGCTGAGGATGCgtgtgacctcccctctcctcctggcTCTCCTAGTACTCCTGCTGCTCCCATCACCCTCCCAGCTGAGGAAGGCAGGCCAGGGCAGGCGGCTCAAAGTAGGCAGACGCCTCCTCAGACGGGACAGGGTGAGAGGTCAGGGGCGCCAGGGCAGGTCAGGAGACTCCAGGCATCAGGTCCCTGAATGCTCAGAGTACAGCGACTCTGAAGACCTCTTCGTGGACTGCCAAGGGAGAAAACTTTCCTCCATCCCCATTGCCTTATCCTGGTCACGGGCTCCAGACCACCTCCTGCTGGCCCGTAACCGTATCCGGGTCCTCCACGACGGGGCCTTCTCTGGCTTCGAGGGCCTGAGGAGCCTGGACCTGCAGCAGAACCGGATCTCAGTGTTGGAGGAGGGGGTGTTCCTGGGCCTGATACACCTCACCACCCTTCTGCTGCAGCACAACCGTCTGGGCACGCTCAGCGAGGAGGCTCTCATCCCCATGCCAGCCCTGCGCTACCTGCGTCTCCATGACAACCCCTGGAGCTGCCGCTGCACACTCGACAGTCTGGTTCGCACCCTGCAGGTGCCCAGCAACCGTAACCTGGGGAACCATGCCAGGTGTGCGGAGCCAGTTGGGCTGAGGGGCAGGAAGCTGAGACAGGTGGACCCAGAGCTGCTGTGTCTGGAGCTGGAGCCTCCCAGCGACCCCCCAGACCCACAGGGGGAGGACCAGAGGGACTCCACATACCCTCTGCAGCCCATCCCCATCAGGGGCAAGCCTGACGCCACCACCTCCTGCCATACCTACCTGTTCCCCACACCCCGACTGGACTGCAGAAGCAGAGATCTGGCGGAGGTACCTGCAGACATCCCAGGGGACATGGTTCACATGGACCTGTCCCAAAATTCCCTCCGGCGCCTGAAGGCCAGAGACTTTGTGGAGGCCAGAAGCCTAAGGTCACTCAATCTCAGCGACAACAACTTGGAGGACATggacacagcCTCCCTGTCTGGCCTTCTCCACCTCCATGAGTTGGACCTTTCCAACAACAACCTGCACTTCTTCCACTATGGTGTTCTAGAAGACCTCTATTTCCTGTCCCTGCTAAGGTTGGGGGGAAACCCCTGGGTCTGTGACTACAGCATTCACTACCTGGTGTACTGGCTACGTCTGCACCCAGGGGTGACCCACTCTGGCCTGCTGTGCCACTCCCCTCCTGAGCTCAGAGGAAAGAGTGTGGAGGACTATGTTCACTCCTACAACAGAGCCTGCAGCCAGACAGAGCACAGTCAGACAGAATACGGCCAGACAGATCCAGAATTGTGGGTCACATCTATGGAGCTGCAGGAGGAGATGGAACCGGCACATCTGAGAGGACCGCAGAAATACCACGTCACCAGGTTGAATTAACAAACTACCCCAGGATGGAATGACTGACACATTGAACACATTGCCTTTTTATAGAGCATTCAAATTAATTCTGTATTAGATGGTAAACTTGAACTTTGTTCAATATTGTCGATCCTGCTTTGTCCcaaaaaacaagaaataacaatCCAAGTAGATATATTGGATTTAGCATATGTGAGAATCCAGAATATAAATGTGGTGTGTATAGACCGTATATAATTTGGGAAAGAAAAAAGGTATATTAGGATGAGCTATATctagaatacaatatatacatacacagtgAGTAAACAACAGTATATAAAACAGAATATGAGGTGACCAGCATTCAATACAtatttttggggcggcaggtagcctagtggttagagctttgggccagtaacccgaaaggttgctggatcgaattgacaaggtaaaaatctgtcgttctgcccctgttccttggcagttaacccactgttccttggtaggccgtcattgtaaataagaatttgttcttaaccgacttgcctagttaactaaaaATGGCTCTATTTAAAATGGGGCATTAGTCTGTAGGCCTTGATTTACTGCAGGTCTACTCAAACTTTTCACCCATACTGTTTATGCCATTTGCACTCCCATTGTGAGTCAATCTGAATCCATTTCATTTTGAGAGCACACAGCAGAACAATCTCTGCCCACATTCCTCTTGCTATTTCCCACAATTATATTAAGATTTTGCCTTTAAAAAAATACTGAACAAACTGTCAAAGCATTTAGGAGCCCTGCTCCTTTCCCAAACATAGTCATGGCCCAGGAATATTTATTTGGCAAGatgtttgattttttttaaaaagcataGTAATCTCTGCCAAGAAATACGCCTTGGTGCCATAGCTACTCTGTAACTGCTAGATTCCTACAGAATGGTCCCAGagacaaaacagtcctgtataaTACTATTATAGGTACGCATTTATTTTATATGACCCATTTCCTAGCATACCCCCACACTAAACATGAACCACTGCTGATTAGTTTCCCTGTGGTTACAACACCCCTGGCCCTACAAATCAAAAACAAGGTCACTAAAAATGTCCTTTGCTAGCAGACATAAAACATACAGGGGTACTTGTTATTATGGGGTAACTGCTTTCAGAAATGGGTCCAGTGACACTATCATCCAGAGAACGAGAGCCATTCCATCCACATAAACccaattcaaaataaaataaaataaagtgcgCGAACGCTGGAAATAGAATGCATATAGTGTGTGATGACGGCCCATGTACAATTAGCACAAGATGCTGCGCGGTGAAACACCACTTCCCATTCATTTCAATGGGGGGGAAAGCGGTGAGAACCGGAGAGGTCGTGGGTCCTTTGGGCGGTGCAAAGGTGGCGTGGGAGGCGGTGAAAAATAACTTTTTCCCAAATGTATGGAAAGTCAGCAGCggtgaccaatcatatcgagtggctCCCATGACGAATTTGACACTGTGCGACCCAAGGCTGGAGACTTTCTTTAGCAAAGACGGCTGACAAAAATACTAggatggaagcaaatGGCACTAAAACTCCTCTCAGCCTCTACAGAGGAGGAAGGGACGACCAGCAGAAGCCTTAATAAAGCTTCCACTTGACTGAA
>TU43145
ataagtttaatgctagctagcaacttaccttggcttactgcatttgcgtaacaggcgtaaactccttgtggagtgcaacgagagagaggcaggtcgttattgcgttggactagttaactgtaaggttgcaagattggatcccccgagctgacaaggtgaaaatctgtcgttctgcccctgaacgaggcagttaacccactgttccttggtaggccgtcattgtaaataagaatttgttcttaaccgacttgcctagttaactaaaaATGGCTCTATTTAAAATGGGGCATTAGTCTGTAGGCCTTGATTTACTGCAGGTCTACTCAAACTTTTCACCCATACTGTTTATGCCATTTGCACTCCCATTGTGAGTCAATCTGAATCCATTTCATTTTGAGAGCACACAGCAGAACAATCTCTGCCCACATTCCTCTTGCTATTTCCCACAATTATATTAAGATTTTGCCTTTAAAAAAATACTGAACAAACTGTCAAAGCATTTAGGAGCCCTGCTCCTTTCCCAAACATAGTCATGGCCCAGGAATATTTATTTGGCAAGatgtttgattttttttaaaaagcataGTAATCTCTGCCAAGAAATACGCCTTGGTGCCATAGCTACTCTGTAACTGCTAGATTCCTACAGAATGGTCCCAGagacaaaacagtcctgtataaTACTATTATAGGTACGCATTTATTTTATATGACCCATTTCCTAGCATACCCCCACACTAAACATGAACCACTGCTGATTAGTTTCCCTGTGGTTACAACACCCCTGGCCCTACAAATCAAAAACAAGGTCACTAAAAATGTCCTTTGCTAGCAGACATAAAACATACAGGGGTACTTGTTATTATGGGGTAACTGCTTTCAGAAATGGGTCCAGTGACACTATCATCCAGAGAACGAGAGCCATTCCATCCACATAAACccaattcaaaataaaataaaataaagtgcgCGAACGCTGGAAATAGAATGCATATAGTGTGTGATGACGGCCCATGTACAATTAGCACAAGATGCTGCGCGGTGAAACACCACTTCCCATTCATTTCAATGGGGGGGAAAGCGGTGAGAACCGGAGAGGTCGTGGGTCCTTTGGGCGGTGCAAAGGTGGCGTGGGAGGCGGTGAAAAATAACTTTTTCCCAAATGTATGGAAAGTCAGCAGCggtgaccaatcatatcgagtggctCCCATGACGAATTTGACACTGTGCGACCCAAGGCTGGAGACTTTCTTTAGCAAAGACGGCTGACAAAAATACTAggatggaagcaaatGGCACTAAAACTCCTCTCAGCCTCTACAGAGGAGGAAGGGACGACCAGCAGAAGCCTTAATAAAGCTTCCACTTGACTGAAGAGACCTCTGGCTCCATTTCCTGAATAATGCTAGCAACAGCCGAGCTCATTTGATATGTGTAATTAGCCCCAAACATGGCCAGCTGCACCTGCAGTAGTCTTGAATTAAATTCAGGATACTCATCTACCACCTTGTCCATGTCTCCGCGTAGCAGCACATTTTCAAGCTGCTGCAGCTTGTGGAATCCAGCTTGATCAAACCTCTAAATTGAGTTTTCACTGTGTCCAAGGCGTTGTAGAATTGGGCTCTGTACAGACTGGGCATCCGGATGGATATGGACCACAGCCTGACTGGTGTAACGCTTTGTAGGCTTGCGGATAGAAGACTCTTAACCATCAATATTTGCACGATCTGATATCTCCGTCTTGGTGTTGTTCCTAAGACATAATGTTTCTCCTGGACCATCATTGCAACTGACCTGTAGTTAGTTGGTTACCCCAGTCCAAAGACAGAATATTCCCTTGCGCCCCACCCtttgacctaaccctaacctcaggTTAAGACACAGGTGCCAGCCACTAAGCTCAGTTGTGCCAACATTAATTATGTCGTAGGAACAACACCAACATAGAGATATCAGATCAGTCATCAATATTTGCTCCTTTTCTCACTCACCTCCATGTCACCTGCTCTCCCTGCCCTGTTAGCATCCTCATGCTTTCTCTTTACTATGAATGCACCAGTGACCATGAAATAAATatcagtaaatcaaatcaaatttatttatatagcccttcgtacatcagatgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacaagtGGTGTTTCTTGCCCTGATGTTCAGGAATGGATTACTAACCATTTCTGATCTGAATGGCAATGATTATTATATCAAGAAACATTGACTCCTCTTGTGCTACTGTATACTTTTATCATCTGTTTGTACTCATTTTCTCAACATACTTTTCTTTTCTGAGGTCCCAAAAAAACTTTCAACAAAACGAATGTCACT

Function

symbol description
lrrc17 Predicted to enable Roundabout binding activity and heparin binding activity. Predicted to be involved in axon guidance and negative chemotaxis. Is expressed in several structures, including digestive system; epidermis; mesenchyme derived from head mesoderm; musculature system; and tail bud. Orthologous to human LRRC17 (leucine rich repeat containing 17).

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600198.2 False 2427 mRNA 0.55 9 36005502 36032179
XR_002473256.2 False 3424 mRNA 0.50 9 36006069 36032178
TU43145 True 2391 lncRNA 0.41 3 36005053 36045196

Neighbor

gene id symbol gene type direction distance location
armc10 armc10 coding downstream 22615 35971331 ~ 35982887 (-)
cax2 LOC106573379 coding downstream 44089 35939742 ~ 35961413 (-)
LOC110522154 LOC105022174 coding downstream 90990 35892507 ~ 35914512 (-)
LOC110521997 LOC100196677 coding downstream 252154 35750305 ~ 35753348 (-)
LOC110522006 LOC106573384 coding downstream 255903 35742650 ~ 35749599 (-)
fam185a fam185a coding upstream 5358 36037537 ~ 36047583 (-)
LOC110522040 LOC106573374 coding upstream 34767 36066946 ~ 36070858 (-)
LOC110532269 LOC106573375 coding upstream 42771 36074950 ~ 36080429 (-)
tmem60 LOC106573373 coding upstream 87092 36119271 ~ 36120989 (-)
LOC110522098 LOC106573370 coding upstream 89491 36121670 ~ 36131381 (-)
G38119 NA non-coding downstream 62235 35942686 ~ 35943267 (-)
G38147 NA non-coding downstream 62898 35942360 ~ 35942604 (-)
G38139 LOC106573381 non-coding downstream 113843 35888587 ~ 35891659 (-)
G38126 NA non-coding downstream 142040 35862825 ~ 35863462 (-)
G38224 NA non-coding upstream 74425 36106604 ~ 36107897 (-)
G38229 NA non-coding upstream 76219 36108398 ~ 36108872 (-)
G38269 NA non-coding upstream 158984 36191163 ~ 36191567 (-)
G38223 NA non-coding upstream 194523 36226702 ~ 36231191 (-)
G38314 NA non-coding upstream 248169 36280348 ~ 36281267 (-)
G38045 LOC106573386 other downstream 283446 35721440 ~ 35722056 (-)
G37976 NA other downstream 421894 35583292 ~ 35583608 (-)
G37907 NA other downstream 564174 35440918 ~ 35441328 (-)
G37310 LOC106573403 other downstream 727497 35273709 ~ 35278005 (-)
G36196 NA other downstream 1624270 34341562 ~ 34381232 (-)
LOC110522187 LOC106573361 other upstream 337915 36370091 ~ 36409064 (-)
G38855 NA other upstream 476359 36508538 ~ 36510829 (-)
G40079 NA other upstream 1684361 37716540 ~ 37717033 (-)
G40732 NA other upstream 2093101 38125280 ~ 38125725 (-)
G40768 LOC106573348 other upstream 2155309 38187488 ~ 38191736 (-)
LOC110522050 LOC106573365 coding upstream 95855 36141051 ~ 36189706 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G82968 NA non-coding NC_048565.1 CM023219.2 74225622 ~ 74226757 (-)
bowfin (Amia calva) G73304 NA non-coding CM030128.1 CM030128.1 34450155 ~ 34450384 (+)