LOC110524441 (LOC106573156)


Basic Information

Item Value
gene id LOC110524441
gene name LOC106573156
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 50260404 ~ 50270301 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604073.2
TGAAGCCCACTGCTCTTCACTTTTACATTCACTAAAGCCAAGGGGACACAGGCAGACACTGTCACTGACAGGACGAAGAGAAGACAAGGACAAAACAGACTGAGTACATTCCTACTCCACCTCCcacttctctgtttctctctcgctttctgcaTTTGACCCCTTAACCCTATGGACTTGGGTCCTGCTTAGCTAGGGTGGATTCAGAGTGTGGGATTTGTACAAAGATGCAGGCACAGCTGGCTTGTGTGCTTCTCCTCTGTTTGCCGtgtggcgtgttatgttcagATGTTGACCAGGAACAGCGGGCAATAGAGGAGGAGCTGTTGAACAGTCTCTTCACTTCAAAGATGAAACAGAGCAAGCAGGGCGCCCCCTACTGGCGTGTGTCCCTGGTGAATGTGTGCAGGATGGTGAACAGCCTGATGAATAGCCTGTCgtggagagaacaggaggagtatAACACTGAGGAGGAGCTGTGGGAGAGACTGGCCTCCCTTCCTGAGCCCCTGGACAAGCTTCTAGACCTACTGCAGATCTGCAGAGTGCTGCAGCCCCGAGAGGTGCTTGACGGCGATCGAAACAGGGACAACCCGCTCAAAAGGAAATCACCGTATATTTTTAAGAGGCAGGTGAAAAACACCAAAGCTCGGAGGCCCTACATATTAAAGCGGAGTACATTTTACTGACCCACCCCGacggaagagaaagaaagacactATATATTCTGTGGATATGTGACCATATGTGCTCTCTGTTGTCGCATTATTATTGATGTTTCCCCggtgtcctgccgatacagatgATATCTCAATCCTGTGTCCATCACCGTAGGTCTCTACTAACATACTAGGCCTGCTCCATAAAGCAAGGACTAATGTAAACAAAAGCAAACAAAAGCAGTAAGCAAATGTGTATCTTTTGAGAGGCTTTGTATTTCTCATTTTTGttcacatgcacaaacacatttCTTTCATTTCCAAATGTGATTAAACAATACATATTTCAAAACCACTGAGATGTCACAAGTCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K05235 NTS; neurotensin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604073.2 True 1032 mRNA 0.47 4 50260404 50270301

Neighbor

gene id symbol gene type direction distance location
LOC110524413 LOC106573141 coding downstream 383912 49848378 ~ 49876492 (-)
LOC110532387 tmtc3 coding downstream 437432 49763995 ~ 49822972 (-)
cbpa1 cbpa1 coding downstream 1031773 49224712 ~ 49228631 (-)
LOC110524388 LOC106573117 coding downstream 1051887 49180132 ~ 49208517 (-)
LOC110524381 cav2 coding downstream 1155669 49098552 ~ 49104735 (-)
LOC110524445 LOC106573110 coding upstream 97265 50367566 ~ 50374531 (-)
LOC110524488 LOC106573155 coding upstream 448335 50718636 ~ 50752172 (-)
LOC110524514 borcs5 coding upstream 507415 50777716 ~ 50792069 (-)
LOC110532393 ckap5 coding upstream 538412 50808713 ~ 50850668 (-)
mapk8ip1a LOC106573101 coding upstream 601174 50871475 ~ 50888496 (-)
G54615 NA non-coding downstream 247666 50012509 ~ 50012738 (-)
G54612 NA non-coding downstream 250635 50009530 ~ 50009769 (-)
G54590 NA non-coding downstream 262001 49998185 ~ 49998403 (-)
G54572 NA non-coding downstream 272838 49987195 ~ 49987566 (-)
G54536 NA non-coding downstream 291856 49967643 ~ 49968548 (-)
G55395 NA non-coding upstream 116705 50387006 ~ 50387249 (-)
G55416 NA non-coding upstream 153320 50423621 ~ 50423840 (-)
G55417 LOC100194703 non-coding upstream 154184 50424485 ~ 50424743 (-)
G55553 NA non-coding upstream 368612 50638913 ~ 50639142 (-)
G55611 NA non-coding upstream 459881 50730182 ~ 50733113 (-)
LOC110532382 LOC106573120 other downstream 1274487 48971580 ~ 49044257 (-)
LOC110524264 LOC106573263 other downstream 1956268 48291626 ~ 48304829 (-)
LOC110524104 LOC106573248 other downstream 2699195 47541224 ~ 47561223 (-)
G51649 LOC106573246 other downstream 2881861 47377641 ~ 47378543 (-)
G51285 LOC106561952 other downstream 2970723 47288939 ~ 47289681 (-)
G55408 NA other upstream 141333 50411634 ~ 50412128 (-)
G55627 NA other upstream 495062 50765363 ~ 50767431 (-)
G56372 NA other upstream 1130426 51400727 ~ 51412569 (-)
G56764 NA other upstream 1476316 51746617 ~ 51747220 (-)

Expression


Co-expression Network