LOC110524881 (LOC106573069)


Basic Information

Item Value
gene id LOC110524881
gene name LOC106573069
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 52925635 ~ 52936875 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604851.2
TTGCACCATCACCTAAAACTACATATTTATAGGGTTGGGTGGTATCTAGATTTTCATCCGGTTTGTGTACCATACGGTATTACCGGAAGTGCGCACAAGGCGTTCCATTTTTAATTGCTCAAAACAGCTTAGACAACtgggatcttgatccaggaggggattgaatCCTTCAGAAAGATGAGTCCTTAGACAAATCCGTTGACTCCTTCCTCTGCACTGATTTGTAAAAGGCTTGACAGGTGAAATCTGGTGGACGTTCATCATTAGGGTGGGTTTTCAGATCAGTACAGATGAGGTGACAGCATTTTGGTATTTGAAAGAGTGTCTTATGGTGATGAAGTACATGAACAGCTGACATGTCAGGTCACCCGTTAGCGGCAGTACACTTCCTGTGGGGGATGGAAGTTTAGGGCTTAGAGTTGATTACCTGCACTCAGGAGGCAGCAGGCAAGGAGAGAGGACTAGGAGAGAAGACAACAAGCCAAGGCATTGAACATGGCCTCTATCCTTCAGAAGCTCATCACTCCCCTGTTCAGTGGGACACCTGAGCCCGCCAGGAACAAGGTGACAGTGGTGGGGGTCGGCCAGGTCGGCATGGCCTGTGCTGTCAGTATCCTGCTCAGGgaGCTGGCTGATGAGCTGGCCTTGGTGGATGTGATGGAGGACAAGTTGAAGGGAGAGATGATGGATCTGCAGCATGGCAGCCTCTTCCTCAAAACGCCCAAGATAGTCGCCAGCAAAGACTACTCTGTGACGGCGAACTCTCGTATCGTCGTGGTAACTGCGGGCGTTCGTcagcaggagggagagagcaggttGAACCTGGTTCAGAGGAACGTCAACATCTTCAAACACATCATCCCTCAGATCATAAAACACTCCCCCAAGTGCATCATCATCGTGGTCTCCAACCCAGTTGATGTGCTGACCTACGTGACTTGGAAGTTGAGCGGCTTGCCCAAGCACCGTGTCATCGGCAGCGGCACCAACCTGGACTCTGCCCGTTTCCGTTACCTGATGGCCGAAAAACTGGGCATCCATGCTACCAGCTTCAACGGATGGATCCTGGGAGAACACGGAGACACCAGtgTCCCTGTGTGGAGCGGCACTAACGTAGCAGGTGTCAACCTGCAGACACTGAACCCTGACATCGGTACTGATGCTGACcaggagaactggaaggaaactCACAAACAGGTGGTTGACAGTGCCTATGAGGTGATCAAGTTGAAGGGCTATACTAACTGGGCCATTGGCCTGAGTGTAGCTGACCTCACTGAGAGCCTCATCAGGAACATGAACAGGATCCACCCTGTCTCCACAATGGTGAAGGGCATGTACGGGATCGATGACGAGGTGTACTTGAGCCTGCCATGCGTGCTGAATGCTGGGGGCGTGGCCAGCGTGGTCAACATGACCCTGACGGACGACGAGATCGGCCAGATAAAACAGAGTGCTGACACACTGTGGGACATCCAGAAGGACCTGACTGACGTGTAGCAACGCTAACAGAACACCAAGGGGCGCCACATTCCACTCAACCCCTAGTGTGTCCCAATAATATCTCCTTTAGTGTGCATTCGTTCACTACTTCCCACAAATCTAAAatcaagtgcacactttgggagaaaggagagataattgggacatAGCCCCAACTCTCCTTATCACCTATTACTCAACATATGCCACTTAGCAGACGGACGCTTTTATGTAAAGCGACTTACACTACAGTGATTGCATATAGTTCTAATATGTGTTTTTGATCTGTGTGGGAATTAAACCCACAGCTTTTGCATTGCTAGCCTCGCTCTTAAAGAGCAACTGCCCCTAAAAAACAACTTCTCGTTTATAAAACCGCCTATGTGGCAAAtttactacaaagtgtaaatgggataattttggtcataaagtcattCTCATCCAAAATGTTGTGACTTGTGGTCGTGACTGCATCACAAcgtaaatgaaggttgggtttgtttcattcctgcccacagctggcagcacaCAATTAATCATCAATTCGGGAGGTGAAGCTGCAAATGATCCAATCTTAATGCCTATGGTAAATTTGGGTTTACTTTGGATATCCATAttgggctagttagggaccattAGTAAATTACACAATGCACATGGGCCAATATGTTAAAATTCCAATAGCTAAAAATGTCAATGACTTAAAAACCTCAAACTAATtataatttaaataaatgtatagaCATGTATTGAAAGCATTTGATGAGAAAACTAAAAGGTGTTCAACATGAAAATATGGTATTTCACATTGTCATTTGTTTGACAGTCCATAACTAGCCCCGGAGATAGGCTATCCAAAGAGAAACCAACTTTGCCATAGTGGCACACCAGCTGGCTGAAGCTAATTGGCTAAATCATTTGACTAACTCTTCccacctgcaaacacacacacaagacacccACATCATACCAGACTCCGAAACCAACTCAAGTTTGAATTCAGTCATGGCCGCTAGCATTTCTAATGAACCAAATCTAAAACGAGAGATAATCAGGAAGTGCAGTTGCCCTTtaacaactgagccacacagttAAAAAATGACACAGGTTCCAAAAATACACTTTCACAGTGTCACTGCTGTTATCTTATACACTTGTAATCTTCATAGCTTTCCTGGCATCTGGGTGTTTGGTCTCATGGTCAAGAGCATTAGGTGTTAGGCTCACTTTGCACATGGCTGCTTAACTGGGAAAGGTGCAGATTGAAGCGTCTTTGTTTCCCTGAAAAAACGCTACATAAAAACATGGAAAAGTGCTAGGCTATATAAAAACCATGTGTCATTCAGATGTGGGATCATCAAATGCTTCAGTAATTTTTCCCTTTTTAAAGTGAAGGGTTATTTAAGGGTTGTTAATCATGTTGGATGTGTAAAATAAAGGTGTTTATTGTTGTTCATT
>XM_021604844.2
TCACCATTATGGGCATTTGAGGAATAAGCTTTATTTCAACCATTGACCCATAATGTCTTTGCATGATTTAAAAAACAAGTTACTCCTAATTTGGCCACATTGCTGCAGCTGTCATCCCGGGAAATAATTATTTTGGTAACACTGACTAGGAATAAAACCTTCATAACACATTATGCGCTATGCATATATCCCCGTTTGTTTATTACTGCCCATATACTGGATACATATCGTCTATAGTCATCAGAGAAGCAGGACAAATGCACCAGATGGAGCCTGTGACATTACAGGATTACAGGATAACTCCTTTTTAACAGTCTGCAGTCAAATTTGGCATCCGATTAGTAGAGCCGTTGGAGcacaggggggagagggagagcagcagcAAACTACAGTAGAGCTCTGTGCTGTCACTGTGGCGCTTTTTGTAGTGCACCCTCGATTTAGGCCTGTGTCACATGCACTGATTGCAGTGCTGCAGCTCACCTATCTGATTCCTCCCACCTGCCCTGTCTGGATTTGGATACAGCCGTTGTGTGAGGTGTTGTGGGTGCAGGGGGAAGGCACCGTAGCTCTCGTCGAGTCTGACATGTTGATTACATGGTGGTATTTATACCTCGCAGCTCGGAGCATCGTCAAACAAACATTGAACATGGCCTCTATCCTTCAGAAGCTCATCACTCCCCTGTTCAGTGGGACACCTGAGCCCGCCAGGAACAAGGTGACAGTGGTGGGGGTCGGCCAGGTCGGCATGGCCTGTGCTGTCAGTATCCTGCTCAGGgaGCTGGCTGATGAGCTGGCCTTGGTGGATGTGATGGAGGACAAGTTGAAGGGAGAGATGATGGATCTGCAGCATGGCAGCCTCTTCCTCAAAACGCCCAAGATAGTCGCCAGCAAAGACTACTCTGTGACGGCGAACTCTCGTATCGTCGTGGTAACTGCGGGCGTTCGTcagcaggagggagagagcaggttGAACCTGGTTCAGAGGAACGTCAACATCTTCAAACACATCATCCCTCAGATCATAAAACACTCCCCCAAGTGCATCATCATCGTGGTCTCCAACCCAGTTGATGTGCTGACCTACGTGACTTGGAAGTTGAGCGGCTTGCCCAAGCACCGTGTCATCGGCAGCGGCACCAACCTGGACTCTGCCCGTTTCCGTTACCTGATGGCCGAAAAACTGGGCATCCATGCTACCAGCTTCAACGGATGGATCCTGGGAGAACACGGAGACACCAGtgTCCCTGTGTGGAGCGGCACTAACGTAGCAGGTGTCAACCTGCAGACACTGAACCCTGACATCGGTACTGATGCTGACcaggagaactggaaggaaactCACAAACAGGTGGTTGACAGTGCCTATGAGGTGATCAAGTTGAAGGGCTATACTAACTGGGCCATTGGCCTGAGTGTAGCTGACCTCACTGAGAGCCTCATCAGGAACATGAACAGGATCCACCCTGTCTCCACAATGGTGAAGGGCATGTACGGGATCGATGACGAGGTGTACTTGAGCCTGCCATGCGTGCTGAATGCTGGGGGCGTGGCCAGCGTGGTCAACATGACCCTGACGGACGACGAGATCGGCCAGATAAAACAGAGTGCTGACACACTGTGGGACATCCAGAAGGACCTGACTGACGTGTAGCAACGCTAACAGAACACCAAGGGGCGCCACATTCCACTCAACCCCTAGTGTGTCCCAATAATATCTCCTTTAGTGTGCATTCGTTCACTACTTCCCACAAATCTAAAatcaagtgcacactttgggagaaaggagagataattgggacatAGCCCCAACTCTCCTTATCACCTATTACTCAACATATGCCACTTAGCAGACGGACGCTTTTATGTAAAGCGACTTACACTACAGTGATTGCATATAGTTCTAATATGTGTTTTTGATCTGTGTGGGAATTAAACCCACAGCTTTTGCATTGCTAGCCTCGCTCTTAAAGAGCAACTGCCCCTAAAAAACAACTTCTCGTTTATAAAACCGCCTATGTGGCAAAtttactacaaagtgtaaatgggataattttggtcataaagtcattCTCATCCAAAATGTTGTGACTTGTGGTCGTGACTGCATCACAAcgtaaatgaaggttgggtttgtttcattcctgcccacagctggcagcacaCAATTAATCATCAATTCGGGAGGTGAAGCTGCAAATGATCCAATCTTAATGCCTATGGTAAATTTGGGTTTACTTTGGATATCCATAttgggctagttagggaccattAGTAAATTACACAATGCACATGGGCCAATATGTTAAAATTCCAATAGCTAAAAATGTCAATGACTTAAAAACCTCAAACTAATtataatttaaataaatgtatagaCATGTATTGAAAGCATTTGATGAGAAAACTAAAAGGTGTTCAACATGAAAATATGGTATTTCACATTGTCATTTGTTTGACAGTCCATAACTAGCCCCGGAGATAGGCTATCCAAAGAGAAACCAACTTTGCCATAGTGGCACACCAGCTGGCTGAAGCTAATTGGCTAAATCATTTGACTAACTCTTCccacctgcaaacacacacacaagacacccACATCATACCAGACTCCGAAACCAACTCAAGTTTGAATTCAGTCATGGCCGCTAGCATTTCTAATGAACCAAATCTAAAACGAGAGATAATCAGGAAGTGCAGTTGCCCTTtaacaactgagccacacagttAAAAAATGACACAGGTTCCAAAAATACACTTTCACAGTGTCACTGCTGTTATCTTATACACTTGTAATCTTCATAGCTTTCCTGGCATCTGGGTGTTTGGTCTCATGGTCAAGAGCATTAGGTGTTAGGCTCACTTTGCACATGGCTGCTTAACTGGGAAAGGTGCAGATTGAAGCGTCTTTGTTTCCCTGAAAAAACGCTACATAAAAACATGGAAAAGTGCTAGGCTATATAAAAACCATGTGTCATTCAGATGTGGGATCATCAAATGCTTCAGTAATTTTTCCCTTTTTAAAGTGAAGGGTTATTTAAGGGTTGTTAATCATGTTGGATGTGTAAAATAAAGGTGTTTATTGTTGTTCATT

Function

NR:

description
L-lactate dehydrogenase B-A chain isoform X1

GO: NA

KEGG:

id description
K00016 LDH, ldh; L-lactate dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604851.2 False 2940 mRNA 0.46 8 52925635 52936875
XM_021604844.2 True 3094 mRNA 0.46 8 52927971 52936875

Neighbor

gene id symbol gene type direction distance location
LOC110524847 LOC106561671 coding upstream 162 52904644 ~ 52925473 (+)
LOC110524844 LOC106573071 coding upstream 35775 52882870 ~ 52889860 (+)
LOC110524813 LOC106573076 coding upstream 202797 52707550 ~ 52722838 (+)
LOC110524804 NA coding upstream 222988 52698680 ~ 52702647 (+)
LOC110524698 LOC106573080 coding upstream 374426 52528778 ~ 52551209 (+)
LOC110524905 s35b4 coding downstream 18928 52955803 ~ 52962832 (+)
LOC118964862 NA coding downstream 42780 52965815 ~ 52988549 (+)
LOC110524916 LOC106573063 coding downstream 71109 53007984 ~ 53047685 (+)
LOC110524927 LOC106573064 coding downstream 123078 53059953 ~ 53072748 (+)
LOC110524948 LOC106573061 coding downstream 144098 53080973 ~ 53149689 (+)
G58134 NA non-coding upstream 62861 52862572 ~ 52862774 (+)
G57811 NA non-coding upstream 177007 52744356 ~ 52748628 (+)
G57802 NA non-coding upstream 294312 52624389 ~ 52631323 (+)
G57758 NA non-coding upstream 333270 52565022 ~ 52592365 (+)
G58205 NA non-coding downstream 6010 52942885 ~ 52943257 (+)
G58229 NA non-coding downstream 59751 52996626 ~ 52996842 (+)
G58230 NA non-coding downstream 60349 52997224 ~ 52997430 (+)
G58192 NA non-coding downstream 94248 53031123 ~ 53031953 (+)
LOC110524575 fgf3 other upstream 1474700 51449353 ~ 51451460 (+)
LOC118964841 NA other upstream 2841639 50037523 ~ 50184257 (+)
G53181 NA other upstream 4031723 48893497 ~ 48893912 (+)
G52324 NA other upstream 4542378 48380542 ~ 48383257 (+)
G52080 NA other upstream 4900677 48006674 ~ 48024958 (+)
LOC118936380 LOC106581842 other downstream 729340 53632830 ~ 53705421 (+)
G59031 NA other downstream 1051265 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 1107974 54044813 ~ 54089850 (+)
G59963 NA other downstream 1784313 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 2968633 55905508 ~ 55923376 (+)

Expression


Co-expression Network