XLOC_019788 (vtnb)


Basic Information

Item Value
gene id XLOC_019788
gene name vtnb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 39067512 ~ 39081107 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038951
GACCATTGATGTTTTCAGGCTAAACAAACAGGGGGACGGGTGACTTTTGGAACCATCGATCGGCACAGATGTCTGACCTGTCCTCTGTCGCTCCAACACATTGCTGTTTCTAGAACAAATCAAGCACTCGTTGCTCACTGTGCCGTTAAACATGAAACTGGCGATTTTATTGTCCCTATTTTTGGCAACTTGTTTTGCTGCGGAGGAAACATGCGAGGGACGCTGCCGGAGTGGTTTTGATCCTACAAAGAAATGCCAATGTGACCGAATGTGCAAATATTATGGAAGCTGCTGTGAGGATTTTGACACCACTTGTCGGACAAAAATTGCTCGCGGTGACATGTTTGACTTGCCTGAGGTAAATGTGACCACTTCAGTGATGCCGACAGAAGAAACCAATCTGACGGTCACCACAGCTCTCCCTACCACCACAGCAGCCCCTTATGTGTCTCCTACAGCTCCCCCAGACCCGGACGCTGTCACCTGCAGCAGACGCACCTTTGATGCCTTCATGCAGCTCAAGAATGGCTCAATCTTTGCCTTCAGAGGCGATTATTTTTTTGAGTTAGATGACAGATCGGTCATGCCTGGGTATCCCAAACTCATCAAGGATGTCTGGGGCATCAACGGTCCTATTGATGCTGCTTTCACCCGCATCAACTGCCAGggaaaaacatacatattcaagGGAAACAAGTACTGGCGTTTTGATGGTGACGTCTTGGATGAAGATTATCCTAGAGACATAGCTGTGGGCTTCGAGAAGATTCCCGATGATGTTGATGCTGCATTTGCAATTCCGGCTCCAGGCCATCATGGGAGGGAAAAGGTGTATTTCTTTAAAGGTGACCAGTACTACCAGTATGAGTTCAAACATCAGCCGTCCCATGAAGAATGTGACCGCATGACCAAGTCCTCACCGTCCGTGGCCTTCACACGATACACAGATCTGTATTGTGACTTTGACATATTTGATCTGGTCTTTCAAGGCGCTCAAGGGCATCACAAAGGGCCACGCTTCATTTCCAAAGACTGGATTGGCATCAAACCACCCGTGGATGCTGCAATGGTGGGTCGACTGTATGTAAACTCCAGCCCATCACCGTCTCCATCCACCAGCCTGAGCAGAGGGCAAAACACACGAAGGAGGCTTAGAGGTAGCAAAGCCAGGGTGAGTCGATCGCTCTTCTGGGAAGACTTCGGACTGGACTATGAGGAAAGGTATTTTGGAACAGAGAAACAgggtaaaaaacagaaaaaaggccGTGGAAGACGTCCATCTTTATTTGACATGAGCTACGACCCGATGGATTACGTCGATGTGGAGGTTGTTCAAGAGAAAGCCACACCTGTGCAGAATGTCTACTTCTTCAAGAAAGACAAATACTACAGAGTGGACCTTCAGACGAAACGGATTGACCGAGTAACTCCTCCTTACCCAAGATCTATTGGCAAATACTGGTTGGGATGTAAAGAAAAGGACTTGTCAgagaaaagatgaaaaaaaaacggAATTTCTATATTTGAGCTGAAAATACAGATTTGAACAGCATTGTTGGATTAGAAGTCATTCATGAGCCATTAATCGCTGTCAGCATTGTAGTtactaaaaaatattatattgaaaaattTCTAATCTTTACAGTAGTAGCAGACAGTTTTTTGCATGCATTAGGATAAAGATTGTCATAaccaatatatatttttcaatatatgATCTTGATCAAATTTGTGACCTGTTCATGTATCAAAATgctgaaaaatattaaacaatgtttCGTGCAA
>TCONS_00038952
CTGGCGTTTTGATGGTGACGTCTTGGATGAAGATTATCCTAGAGACATAGCTGTGGGCTTCGAGAAGATTCCCGATGATGTTGATGCTGCATTTGCAATTCCGGCTCCAGGCCATCATGGGAGGGAAAAGGTGTATTTCTTTAAAGGTGACCAGTACTACCAGTATGAGTTCAAACATCAGCCGTCCCATGAAGAATGTGACCGCATGACCAAGTCCTCACCGTCCGTGGCCTTCACACGATACACAGATCTGTATTGTGACTTTGACATATTTGATCTGGTCTTTCAAGGCGCTCAAGGGCATCACAAAGGGCCACGCTTCATTTCCAAAGACTGGATTGGCATCAAACCACCCGTGGATGCTGCAATGGTGGGTCGACTGTATGTAAACTCCAGCCCATCACCGTCTCCATCCACCAGCCTGAGCAGAGGGCAAAACACACGAAGGAGGCTTAGAGGTAGCAAAGCCAGGGTGAGTCGATCGCTCTTCTGGGAAGACTTCGGACTGGACTATGAGGAAAGGTTTGTTAAAGAggacatttatttgattttattatattttctgaGATCCACTTATAATGTAGGGAAAACAATTGCATCCAAAATCATCACAAATTAGTTGAGTACATCACAACAGCGTCATCTGTTATTTTGATATGCAAAACATATACTTTATTATAGAAGCTTGTGGTTGAATTATGTCTTTAAGAGAGGGTCAAAAAACAAATATACTTAattttaaaagcttaatttaATTACGATACACATTTTCACCCAGTTGAATTGTGTTATTGCAACTTAATTCCATTTATCAAGGGTcccaaaatattatattatattatattatattatattatattatattatatt

Function

symbol description
vtnb Predicted to enable polysaccharide binding activity and scavenger receptor activity. Predicted to act upstream of or within immune response. Predicted to be located in extracellular region. Is expressed in hypothalamus; liver; liver primordium; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Churg-Strauss syndrome; granulomatosis with polyangiitis; and thrombosis. Orthologous to human VTN (vitronectin).

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0030247 polysaccharide binding molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041116-1 Predicted to enable polysaccharide binding activity and scavenger receptor activity. Predicted to act upstream of or within immune response. Predicted to be located in extracellular region. Is expressed in hypothalamus; liver; liver primordium; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Churg-Strauss syndrome; granulomatosis with polyangiitis; and thrombosis. Orthologous to human VTN (vitronectin).

Ensembl:

ensembl_id ENSDARG00000053831

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038951 False 1785 mRNA 0.45 9 39067512 39081107
TCONS_00038952 True 870 lncRNA 0.40 3 39069353 39072774

Neighbor

gene id symbol gene type direction distance location
XLOC_019787 aldh3a2b coding downstream 9022 39029713 ~ 39058490 (-)
XLOC_019786 traf4b coding downstream 42758 39005905 ~ 39024754 (-)
XLOC_019785 tlr22 coding downstream 213775 38849851 ~ 38853737 (-)
XLOC_019784 taf9 coding downstream 336871 38724046 ~ 38730641 (-)
XLOC_019783 siah2l coding downstream 349658 38659302 ~ 38717854 (-)
XLOC_019789 unc119b coding upstream 40346 39121453 ~ 39177564 (-)
XLOC_019790 trarg1b coding upstream 159790 39240897 ~ 39253647 (-)
XLOC_019791 CU442763.1 coding upstream 186118 39267225 ~ 39267306 (-)
XLOC_019792 aifm5 coding upstream 221686 39302793 ~ 39327223 (-)
XLOC_019793 NA coding upstream 246996 39328103 ~ 39337096 (-)
XLOC_019782 NA non-coding downstream 434605 38629308 ~ 38632907 (-)
XLOC_019779 NA non-coding downstream 604366 38457283 ~ 38463146 (-)
XLOC_019777 BX530030.1 non-coding downstream 1004198 38063197 ~ 38063314 (-)
XLOC_019769 NA non-coding downstream 1434804 37594351 ~ 37632708 (-)
XLOC_019768 NA non-coding downstream 1485398 37578746 ~ 37582114 (-)
XLOC_019794 NA non-coding upstream 278044 39359151 ~ 39362176 (-)
XLOC_019801 NA non-coding upstream 824796 39905903 ~ 39912107 (-)
XLOC_019802 NA non-coding upstream 842663 39923770 ~ 39924444 (-)

Expression


Co-expression Network