RNA id: TCONS_00038952


Basic Information

Item Value
RNA id TCONS_00038952
length 870
lncRNA type retained_intron
GC content 0.40
exon number 3
gene id XLOC_019788
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 39067512 ~ 39081107 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGCGTTTTGATGGTGACGTCTTGGATGAAGATTATCCTAGAGACATAGCTGTGGGCTTCGAGAAGATTCCCGATGATGTTGATGCTGCATTTGCAATTCCGGCTCCAGGCCATCATGGGAGGGAAAAGGTGTATTTCTTTAAAGGTGACCAGTACTACCAGTATGAGTTCAAACATCAGCCGTCCCATGAAGAATGTGACCGCATGACCAAGTCCTCACCGTCCGTGGCCTTCACACGATACACAGATCTGTATTGTGACTTTGACATATTTGATCTGGTCTTTCAAGGCGCTCAAGGGCATCACAAAGGGCCACGCTTCATTTCCAAAGACTGGATTGGCATCAAACCACCCGTGGATGCTGCAATGGTGGGTCGACTGTATGTAAACTCCAGCCCATCACCGTCTCCATCCACCAGCCTGAGCAGAGGGCAAAACACACGAAGGAGGCTTAGAGGTAGCAAAGCCAGGGTGAGTCGATCGCTCTTCTGGGAAGACTTCGGACTGGACTATGAGGAAAGGTTTGTTAAAGAggacatttatttgattttattatattttctgaGATCCACTTATAATGTAGGGAAAACAATTGCATCCAAAATCATCACAAATTAGTTGAGTACATCACAACAGCGTCATCTGTTATTTTGATATGCAAAACATATACTTTATTATAGAAGCTTGTGGTTGAATTATGTCTTTAAGAGAGGGTCAAAAAACAAATATACTTAattttaaaagcttaatttaATTACGATACACATTTTCACCCAGTTGAATTGTGTTATTGCAACTTAATTCCATTTATCAAGGGTcccaaaatattatattatattatattatattatattatattatattatatt

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0030247 polysaccharide binding molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041116-1 Predicted to enable polysaccharide binding activity and scavenger receptor activity. Predicted to act upstream of or within immune response. Predicted to be located in extracellular region. Is expressed in hypothalamus; liver; liver primordium; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Churg-Strauss syndrome; granulomatosis with polyangiitis; and thrombosis. Orthologous to human VTN (vitronectin).

Ensembl:

ensembl_id ENSDART00000145329

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00038950 lncRNA downstream 10872 39046976 ~ 39058481 (-) True XLOC_019787
TCONS_00038942 lncRNA downstream 338756 38726202 ~ 38730597 (-) False XLOC_019784
TCONS_00039685 lncRNA downstream 338756 38727099 ~ 38730597 (-) False XLOC_019784
TCONS_00038945 lncRNA downstream 338756 38728867 ~ 38730597 (-) True XLOC_019784
TCONS_00038944 lncRNA downstream 338790 38728157 ~ 38730563 (-) False XLOC_019784
TCONS_00039686 lncRNA upstream 255329 39328103 ~ 39331628 (-) False XLOC_019793
TCONS_00039687 lncRNA upstream 255329 39328103 ~ 39337096 (-) True XLOC_019793
TCONS_00039688 lncRNA upstream 286377 39359151 ~ 39362176 (-) True XLOC_019794
TCONS_00039257 lncRNA upstream 530792 39603566 ~ 39604612 (-) True XLOC_019798
TCONS_00039258 lncRNA upstream 580817 39653591 ~ 39663379 (-) True XLOC_019800
TCONS_00038949 mRNA downstream 10863 39029713 ~ 39058490 (-) False XLOC_019787
TCONS_00038948 mRNA downstream 44599 39005905 ~ 39024754 (-) True XLOC_019786
TCONS_00038946 mRNA downstream 215616 38849851 ~ 38853737 (-) False XLOC_019785
TCONS_00038947 mRNA downstream 216493 38849881 ~ 38852860 (-) True XLOC_019785
TCONS_00038940 mRNA downstream 338712 38724046 ~ 38730641 (-) False XLOC_019784
TCONS_00038953 mRNA upstream 48679 39121453 ~ 39177564 (-) True XLOC_019789
TCONS_00038954 mRNA upstream 168123 39240897 ~ 39253647 (-) True XLOC_019790
TCONS_00038956 mRNA upstream 230019 39302793 ~ 39325599 (-) False XLOC_019792
TCONS_00038957 mRNA upstream 230383 39303157 ~ 39327223 (-) True XLOC_019792
TCONS_00038958 mRNA upstream 439663 39512437 ~ 39546737 (-) True XLOC_019795
TCONS_00038943 other downstream 339335 38727099 ~ 38730018 (-) False XLOC_019784
TCONS_00038929 other downstream 1006039 38063197 ~ 38063314 (-) True XLOC_019777
TCONS_00038902 other downstream 1996273 37072951 ~ 37073080 (-) True XLOC_019765
TCONS_00038875 other downstream 4532979 34430460 ~ 34536374 (-) True XLOC_019748
TCONS_00038861 other downstream 5932270 33136948 ~ 33137083 (-) True XLOC_019739
TCONS_00038955 other upstream 194451 39267225 ~ 39267306 (-) True XLOC_019791
TCONS_00038972 other upstream 1005177 40077951 ~ 40081929 (-) True XLOC_019807
TCONS_00038990 other upstream 1330486 40403260 ~ 40411647 (-) True XLOC_019813
TCONS_00039012 other upstream 2178657 41251431 ~ 41251548 (-) True XLOC_019825
TCONS_00039016 other upstream 2278771 41351545 ~ 41351665 (-) True XLOC_019828

Expression Profile

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