RNA id: TCONS_00038957


Basic Information

Item Value
RNA id TCONS_00038957
length 1632
RNA type mRNA
GC content 0.48
exon number 19
gene id XLOC_019792
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 39302793 ~ 39327223 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTGCGAAACAATCAGGTTTAGAAGCTGGTTTGGATCCAGAAGAAGAAGTGACAAATGTTGTTTGTGATGATGCAGATCTCAGAGATGGAGAGATGATGGAGGTTGAGGTTGGTGATCACAATGTTTTGCTGGTCCGCTGTGACGGAGTGTACAGTGCCATCAGTAACCAGTGCACACACTATGGTGCTCCGTTGAGTGAAGGGGTGCTGTCGGGTTGTAGGGTGCGCTGTCCCTGGCATGGGTCCTGTTTTAATGTGAAGACTGGAGACCTGGAGGAGTATCCTGGGATTGACTGTCTGCCCTGCCACAAGGTGAAAGTCGAAAACAACAAAGTGTATGTGTCTGTAAAGAAAAGGATTCGGGGTCAGCCTAAACGTGTAAAATGGATGGGAGTCCGAGATCAGTCGGTGTCACATACTGTGATGCTCCTCGGAGGAGGCGCAGCCTGCTTAATGTGTGCTGAGACGCTACGGCAAGAAAACTATGGCGGCAGGATTATTATGGTTTCTAGAGACGACCTCCTTCCATATGACAAAACCAGACTCAGTAAGGTGATGAATGCTGAGAGCGACAGTCTGTTAATGAGAAGAATGGACTTTTTCCACAAACATGATATTGAGGTCTGGTTGAAGAAAGAGGCTTTATCAATAGACACAAACAAGAAAACAGTGACATTTGATGATGGGTTAATCCAGAGTTATGACCAAATTCTGATAGCAACTGGGTGCAGAGCAAAAGGTCTGGACTGCCCGGGTGCAAACCTGGAACGGGTGCTAATGCTAGAAACACCAGAGGATGCCAGGTGCGTCCACTATGCCTGTACGGGCTGCAGGACAGTCATCGTGGGCACTTCTTTTATTGGCATGGAAGTGGCAGCTTATTTGCTAGACACGTCCAGCAGTATGACAGTCATCGGCAGCAGTGAACTGCCCTATCAGAAGACTCTGGGCCGGGAGATAGGAAAGGTCACCATGACGATGCTGGAAGAGAAAGGGGTGACGTTCTACATGAATGATGCTGTCGCAGAAGTTCAGGGCAAAAATAGGAGGGTTAAGGCAGTGAAACTGAAGAGCGGCATCACTATTGAAGCTGATTTGTTAATTGTTGCAATTGGTGTCAGTCCGAATTCAGAGTTTCTAAAGGGGAGTCGAGTAAGAATGGACTCAAAGAACTATGTCATTGTGGATGAGTACATGAGGACCAACATAACAGACGTCTACTGTGCTGGAGATCTGACCTCCTTTCCTCTCAAAATGGCAAAAGGCCAGAAAGTGAGCCTTGGCCATTGGCAGATAGCGCAGGCACATGGAAGGATTGCAGCTCTCAACATGCTGTGCAGAGAAGTGGAGCTAAACACAGTGCCATACTACTGGACCGTCCTGTTCGGGAGAACCATTCGATACGCTGGATATGGGGAGGGATACACTGAGATGGTGCTGAAAGGGAAGTTTGAGAACATGAAGTTTTTGGCACTTTACCTCAAGGATGGTGAGGTGGTGGCTGCCGCAGGACTGAATGTTGAACCCGCCGTTTCTGTGGTGGCAGAGAGACTGGCAGAAGGAAGAGTGATTACAAAGGCAGAGGCAGAgtcaGATGACCTCAGTTGGCTGAAACTGGAGCCCATGTGA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-96 Predicted to enable several functions, including 2 iron, 2 sulfur cluster binding activity; flavin adenine dinucleotide binding activity; and metal ion binding activity.

Ensembl:

ensembl_id ENSDART00000115097

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00038952 lncRNA downstream 230383 39069353 ~ 39072774 (-) True XLOC_019788
TCONS_00038950 lncRNA downstream 244676 39046976 ~ 39058481 (-) True XLOC_019787
TCONS_00039685 lncRNA downstream 572560 38727099 ~ 38730597 (-) False XLOC_019784
TCONS_00039686 lncRNA upstream 880 39328103 ~ 39331628 (-) False XLOC_019793
TCONS_00039687 lncRNA upstream 880 39328103 ~ 39337096 (-) True XLOC_019793
TCONS_00039688 lncRNA upstream 31928 39359151 ~ 39362176 (-) True XLOC_019794
TCONS_00039257 lncRNA upstream 276343 39603566 ~ 39604612 (-) True XLOC_019798
TCONS_00039258 lncRNA upstream 326368 39653591 ~ 39663379 (-) True XLOC_019800
TCONS_00038954 mRNA downstream 49510 39240897 ~ 39253647 (-) True XLOC_019790
TCONS_00038953 mRNA downstream 125593 39121453 ~ 39177564 (-) True XLOC_019789
TCONS_00038951 mRNA downstream 222050 39067512 ~ 39081107 (-) False XLOC_019788
TCONS_00038949 mRNA downstream 244667 39029713 ~ 39058490 (-) False XLOC_019787
TCONS_00038948 mRNA downstream 278403 39005905 ~ 39024754 (-) True XLOC_019786
TCONS_00038958 mRNA upstream 185214 39512437 ~ 39546737 (-) True XLOC_019795
TCONS_00038959 mRNA upstream 230210 39557433 ~ 39566854 (-) True XLOC_019796
TCONS_00038960 mRNA upstream 240282 39567505 ~ 39577517 (-) True XLOC_019797
TCONS_00038961 mRNA upstream 256235 39583458 ~ 39604549 (-) False XLOC_019798
TCONS_00038962 mRNA upstream 256508 39583731 ~ 39604628 (-) False XLOC_019798
TCONS_00038955 other downstream 35851 39267225 ~ 39267306 (-) True XLOC_019791
TCONS_00038943 other downstream 573139 38727099 ~ 38730018 (-) False XLOC_019784
TCONS_00038929 other downstream 1239843 38063197 ~ 38063314 (-) True XLOC_019777
TCONS_00038902 other downstream 2230077 37072951 ~ 37073080 (-) True XLOC_019765
TCONS_00038875 other downstream 4766783 34430460 ~ 34536374 (-) True XLOC_019748
TCONS_00038972 other upstream 750728 40077951 ~ 40081929 (-) True XLOC_019807
TCONS_00038990 other upstream 1076037 40403260 ~ 40411647 (-) True XLOC_019813
TCONS_00039012 other upstream 1924208 41251431 ~ 41251548 (-) True XLOC_019825
TCONS_00039016 other upstream 2024322 41351545 ~ 41351665 (-) True XLOC_019828
TCONS_00039031 other upstream 2536431 41863654 ~ 41873097 (-) True XLOC_019836

Expression Profile

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