RNA id: TCONS_00039688


Basic Information

Item Value
RNA id TCONS_00039688
length 2282
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id XLOC_019794
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 39359151 ~ 39362176 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTCTGATCCTCTTTTCTTTCTACCTGGGTCACAGCGAGGGTTGTCTGCTCAGAGTGCTGCAGTGATAACCCTGAGCTCTGCTTTAGCACTTCCAAATCCCACTGCGTCTGTTCTACTTCCTTATTCCAAACAAAACCCTGGTCTATCTGTGAAGGGCTTTGCTTCATCTCCCCAAACTCTTGCTCCTCCAGCCCAGAGCTCATGTCAGCAATGTCTGGTTGCTCTACAAGAGACGTTTCCTTCTCAGTAGCATGCTCGTGTTTAATAATTCGCATCTCTAGTATCTCAGAAGCCTGTGCATCTATTTTGAAGTCTAGTTTTTCATCAGGTTGTGCTGTGAGTTCTGAAGTTTGTGCTTCCCTTTGCGACTTTTGAAGCAAAGGCCATTCAGTTGGAATGCCATAAGCAGGTTGCATCTTTATCGCATCTAGATGTGCTTGTGCTGCACTGTTTGGACCACTTTCGTTTAGTTTCTTTTTGTCCTGTTTCTTCTCGGCGTGTAATTGCTCCTTTGGGGTTTTGAGTTCATTGTACTGCTCTGTTTGAGTCGTGCCATCTTCTCTCTGACTGATGTCAAAATCGCATTTTGAGACATCTAGTGAAGATGCAGCAAACATGGAAGAAACGTCTGTCCCATGAGCAAAGACAGGTTTACAAGTGTCTGCTTCTAATCCATGGGTGCATATTCGGTTTTGAGCAGCAGGTGCTTGGTAGAGGGATGACAGAAGAGGCCATTCATCCTCTATGGAGCGTGATTGATTTGTGCCTGTGATGTTTGTGCTTGGCGGCCCCACCAGCCCTCTATTTCTTTCTCCTCCATTTCGTGGATTGCTTTCATCAAATCCATCTTCTCTGCTGGCCTCTTGCCCGCTTGTTGCCAATAAGAGCTCCAAAGCCTCAGTTGAGTCTCCTCTGATGTGAAGGTTGCTGCTGAGCACAATGTCAGGAAACAAAAGGTGATCTTGGTCCAGAACTGGGGAGTCCAGCAGATCAGCTGAGGTCCTTGAAGGAGAGACACTTTCTCCATCGCTGTTTTCCTGGGATAAGAGCGCCGAGTGCTCTTCAGTCTGATCAGCAGCTCCCTTGGTGGTAATATATTCTGACACTTTACGGCAACAATAAAGTATGTTTCCCATGCTGTCTGTTTGATTGCCAAAGAGTAAAAGAGCTGTAATCTGAAAGTCCCAAAACTCAAGTACGCCCAAAATCAGCTACTAGAGCTTATTTGGATTTAAAATGAgctagaaaatgttgctttataCGTAAATCTAAAGACATGCCTGACAGATAGTTGACAGACCCAATTACCAAGTCTGGCACTTGGCCTGTGCATTTCTTAGCTGTAGATAGTAAAGACATGTGACTGTTTGCATGCCAGAATACAATTATGATTTATGCATAGATAAACTGCCTGACTGGATGAAAGTTTGTCCTATATATTAATGCACGTATATAAAACAGTTAATGGAAGATCAGAAAATTGCATAGgttaaaataaatctgatttaacgatcaaaacattttaatatatgttAAACTAGTGcattaataaatcataataaacatGCAGACATCTTCTCACAGTTTTGTACTTGTACTCCATATGCCTCAAAAATCTCTACAGAATCATAGATAGGCAGAAGAGCTCGTCCCAAGCAGGATATGTCCATGTTTTCCAACCAAACGCAACACATTTCAGTTCTAGTGTGTTCTCTAATGTCCTTCACTCGGGGTCTCGTGAACCGCTCCATCCCTCCAACACATTCAGTCCCGGGCGGAGGAGTATCGGCGGAGTTTCCTGCATCCCATCCCTCTTCCAGAGAAACCGCAACTCATTTCTTCGGTTTCATTAAAGAAAAAACACGCGTCATGACTTCTTCAGTCTATGCCAGTGCATGTTTCCCCCAGGAGTCTGCGTGTTTTCTGCGAGCTGTCCGCTTTGAATCAGCTGCTGCTGCAGTACTGGCAGAATGTGCAGGAGATGCTTTAAAAGCACACACTAGTGGGAGAAGTGCAAGGATTAGCCCACAGCACAATAAGAATAGGCTACCAAGCCAAACGAAGTAGAAAACGTTATTATTGCTGTAAGCTTGTCGAAGCTCTTCACTGCGGTCAAAACAGCAAGTCGCTGCGCTGCTTGAAAATTACGTTACAAGGAAAGCCTGAGGCGAGATGAGCGCGTATTACTGCAATTACGGTAATGACAGAAACAATTTACAGGTATTTGCATGCAAAACATGCAATCCACTGTTTTGATGTTATCTAAGGCACTACACCTTGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039687 lncRNA downstream 22055 39328103 ~ 39337096 (-) True XLOC_019793
TCONS_00039686 lncRNA downstream 27523 39328103 ~ 39331628 (-) False XLOC_019793
TCONS_00038952 lncRNA downstream 286377 39069353 ~ 39072774 (-) True XLOC_019788
TCONS_00038950 lncRNA downstream 300670 39046976 ~ 39058481 (-) True XLOC_019787
TCONS_00039685 lncRNA downstream 628554 38727099 ~ 38730597 (-) False XLOC_019784
TCONS_00039257 lncRNA upstream 241390 39603566 ~ 39604612 (-) True XLOC_019798
TCONS_00039258 lncRNA upstream 291415 39653591 ~ 39663379 (-) True XLOC_019800
TCONS_00039259 lncRNA upstream 543727 39905903 ~ 39912107 (-) True XLOC_019801
TCONS_00039260 lncRNA upstream 561594 39923770 ~ 39924444 (-) True XLOC_019802
TCONS_00038976 lncRNA upstream 795689 40157865 ~ 40160887 (-) False XLOC_019808
TCONS_00038957 mRNA downstream 31928 39303157 ~ 39327223 (-) True XLOC_019792
TCONS_00038956 mRNA downstream 33552 39302793 ~ 39325599 (-) False XLOC_019792
TCONS_00038954 mRNA downstream 105504 39240897 ~ 39253647 (-) True XLOC_019790
TCONS_00038953 mRNA downstream 181587 39121453 ~ 39177564 (-) True XLOC_019789
TCONS_00038951 mRNA downstream 278044 39067512 ~ 39081107 (-) False XLOC_019788
TCONS_00038958 mRNA upstream 150261 39512437 ~ 39546737 (-) True XLOC_019795
TCONS_00038959 mRNA upstream 195257 39557433 ~ 39566854 (-) True XLOC_019796
TCONS_00038960 mRNA upstream 205329 39567505 ~ 39577517 (-) True XLOC_019797
TCONS_00038961 mRNA upstream 221282 39583458 ~ 39604549 (-) False XLOC_019798
TCONS_00038962 mRNA upstream 221555 39583731 ~ 39604628 (-) False XLOC_019798
TCONS_00038955 other downstream 91845 39267225 ~ 39267306 (-) True XLOC_019791
TCONS_00038943 other downstream 629133 38727099 ~ 38730018 (-) False XLOC_019784
TCONS_00038929 other downstream 1295837 38063197 ~ 38063314 (-) True XLOC_019777
TCONS_00038902 other downstream 2286071 37072951 ~ 37073080 (-) True XLOC_019765
TCONS_00038875 other downstream 4822777 34430460 ~ 34536374 (-) True XLOC_019748
TCONS_00038972 other upstream 715775 40077951 ~ 40081929 (-) True XLOC_019807
TCONS_00038990 other upstream 1041084 40403260 ~ 40411647 (-) True XLOC_019813
TCONS_00039012 other upstream 1889255 41251431 ~ 41251548 (-) True XLOC_019825
TCONS_00039016 other upstream 1989369 41351545 ~ 41351665 (-) True XLOC_019828
TCONS_00039031 other upstream 2501478 41863654 ~ 41873097 (-) True XLOC_019836