XLOC_019798 (pigs)


Basic Information

Item Value
gene id XLOC_019798
gene name pigs
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 39583458 ~ 39604628 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038961
GAGTCTTGTTCAttcatttgcaacaatttccTGTTATTTTTCGACATCATATAagtgtttatgtattttatttgcgcacgaatgtttatttattaactataaCACTGAAAAGAAATGTCAGCGTGTTGCTAATTtattcactttaagctgtttatgtTGAAATACCAGGGTAGGGTCACTCACTGTATGGATGTATTGATGTCCTTTGTGTTTTACGTCACCGTCCCTATGAATAACGCATGCTATTGAAAATTGTTTTATTGGGCATAACAGAAAAGGAGCGAGGGCGATATGCTGCTCTGGCCATCGCTGCAGTAGTAATAATAGTGGGAATCCCGCTGTGGTGGAAAACCACCGAAACCTACCGAGCCTGGCTGCCTTTTTCGGACATCAACGAACTGGACTCGCTTCAGCTCCGGCTCAGTGTTGATATCGAGGTGGTCTTCTCTCGGGGGACACTGACCCCAGAACAGCAGAAGAAGATTCCACTTAGTCATGTCAATGAAAAAGAGCATCAAGTTGATGCTAAGACAagtttgaggtaccaatatgaaacCAGATACCGCACTGCTACTGTTATGGAAGAAGACGCCTTGAATCAGCCCACAGCTGCAGAGGCTGATTTATCCTTGCACACTCTGACCGAGAGTTCCTGTGGGTCTGTGGTTGTGTATGTGATCCCCGAGTCCTCCGTTCTTCTTCCAGAGGATGTGAAAGTGTACGTTGGGCAGCGGCGCACCGCTCTGCTGCGTTCCCCTCCTATTAAAAGTTCTTGGAGTCTGAATGAAGTCATCTCCAATCTAAACCCAAGGGTGGAGCAGATAGCGAGCACCATGTCTTTCAGTCATCAAGATATTACAGCAGCTCTGAGCGACCGAGTCCGAATGACCAAAGTGACCAAGGAGAGTATGGCAGACAGCATGAGGGCCATCAAATCTAGTCCAGGTTATGAGATCACTTTCAGTCTGTTAAACCCCGACCCGAAGTCACACAGTCTTCACTGGGATATCGAGGGTGCTCTTCATAGCTACATTCAGCCGTTATTGAACAAACTCGCTCCTATTGCCAACTTTTCAGTGGATTCTCAGatTCTGTATTATGCAGTTCTGGGAGTGAATCCTCGTTTTGACAACAGTGTGTCGGCCTATACACTGAATGCGGACAGCCTGTCTCATGTCATCAATCCCGTGGAGGCCAGACTAGGATCTAACGCTGCTTCCTCAAACCCTGTCCTAAACTTCCTGCTGTATGTGCCAGATGCCCATCACTCTCCTCTGTTCATCAGAGACCACAGCAGAAGAGAGGTGCCTACCAATGCCTTTCACAGCCCGCGCTGGGGCGGCATCATGGTGTACAACGTGAATGATCTGTACGGCCCTGAATCTGAACGTCCTGTCGATATCAGCATTAACATGGCTAAAGTGATGGGTGTTTTCCTGGCACAGTTACGGCTTATGTTGGGTGTCCACCAAACTCATCCTCCATCAGGCTTCGTTCTTCAGAGTCCTGGCAGCGCTGGACTGGCCGACTGGGAGCTGGACAGGCTGATGTGGAGCCGCAGCGTGGAGAACATTGCCACTGCCAGCACCACCATCACCTCTCTGGCTCAGCTGCTCGACCAGATTGGAAATATCGTCATTAATGACAACATCGCACTGCAGGTTTCCAGTGCAGTGACATCTCTCCAGGCTGCTGTGGCCGAGTTGGACGCAGGGAATTTGGTTTTTGCACTCCAGTACAGCAGGGAGGCTATTCTGGCGTCAGAGAGGGCTTTTTTTGACCCTTCTCTTTTGCATCTGCTTTACTTTCCAGATGATCAGAAGTTTGCCATCTACATTCCTCTCTTCCTTCCCATGTGTGTGCCTATTGTGCTCTCGCTGCTCAAAATAGTGAGCGAAGTTAAGAAAAGGCGAGCAGAAAAACAAGCTAAAAGTGACTGAGAAGCCATGGCTTGTTGCGTAAACACACTGATTCATTAAAAGATGATGTGTGTGTGGgatgtacattttaatttaatttattaaaccaaGTGTTCAGCTGACAGCAACTGAAAAGGAACTCATGCAATATCTGGCATCAGATTAATACATTGCGGTTTAAATTTGCACTGGCAGCTGTACTGAACAGAGAATGGTTGATTCTGTCTGGGAGgaatttgctgttgtttttttgttgatgCGCACATTAAGTGTTTGCACTCTGTGTCTTGCTTT
>TCONS_00038962
CATCTGATTGGGTCAAATCCTCCAATAGAGTGCCTTGCGGTAGTCATTCCATACAGCAATGGCAGCTTTGCAGCTCGAAAAGGAGCGAGGGCGATATGCTGCTCTGGCCATCGCTGCAGTAGTAATAATAGTGGGAATCCCGCTGTGGTGGAAAACCACCGAAACCTACCGAGCCTGGCTGCCTTTTTCGGACATCAACGAACTGGACTCGCTTCAGCTCCGGCTCAGTGTTGATATCGAGGTGGTCTTCTCTCGGGGGACACTGACCCCAGAACAGCAGAAGAAGATTCCACTTAGTCATGTCAATGAAAAAGAGCATCAAGTTGATGCTAAGACAagtttgaggtaccaatatgaaacCAGATACCGCACTGCTACTGTTATGGAAGAAGACGCCTTGAATCAGCCCACAGCTGCAGAGGCTGATTTATCCTTGCACACTCTGACCGAGAGTTCCTGTGGGTCTGTGGTTGTGTATGTGATCCCCGAGTCCTCCGTTCTTCTTCCAGAGGATGTGAAAGTGTACGTTGGGCAGCGGCGCACCGCTCTGCTGCGTTCCCCTCCTATTAAAAGTTCTTGGAGTCTGAATGAAGTCATCTCCAATCTAAACCCAAGGGTGGAGCAGATAGCGAGCACCATGTCTTTCAGTCATCAAGATATTACAGCAGCTCTGAGCGACCGAGTCCGAATGACCAAAGTGACCAAGGAGAGTATGGCAGACAGCATGAGGGCCATCAAATCTAGTCCAGGTTATGAGATCACTTTCAGTCTGTTAAACCCCGACCCGAAGTCACACAGTCTTCACTGGGATATCGAGGGTGCTCTTCATAGCTACATTCAGCCGTTATTGAACAAACTCGCTCCTATTGCCAACTTTTCAGTGGATTCTCAGatTCTGTATTATGCAGTTCTGGGAGTGAATCCTCGTTTTGACAACAGTGTGTCGGCCTATACACTGAATGCGGACAGCCTGTCTCATGTCATCAATCCCGTGGAGGCCAGACTAGGATCTAACGCTGCTTCCTCAAACCCTGTCCTAAACTTCCTGCTGTATGTGCCAGATGCCCATCACTCTCCTCTGTTCATCAGAGACCACAGCAGAAGAGAGGTGCCTACCAATGCCTTTCACAGCCCGCGCTGGGGCGGCATCATGGTGTACAACGTGAATGATCTGTACGGCCCTGAATCTGAACGTCCTGTCGATATCAGCATTAACATGGCTAAAGTGATGGGTGTTTTCCTGGCACAGTTACGGCTTATGTTGGGTGTCCACCAAACTCATCCTCCATCAGGCTTCGTTCTTCAGAGTCCTGGCAGCGCTGGACTGGCCGACTGGGAGCTGGACAGGCTGATGTGGAGCCGCAGCGTGGAGAACATTGCCACTGCCAGCACCACCATCACCTCTCTGGCTCAGCTGCTCGACCAGATTGGAAATATCGTCATTAATGACAACATCGCACTGCAGGTTTCCAGTGCAGTGACATCTCTCCAGGCTGCTGTGGCCGAGTTGGACGCAGGGAATTTGGTTTTTGCACTCCAGTACAGCAGGGAGGCTATTCTGGCGTCAGAGAGGGCTTTTTTTGACCCTTCTCTTTTGCATCTGCTTTACTTTCCAGATGATCAGAAGTTTGCCATCTACATTCCTCTCTTCCTTCCCATGTGTGTGCCTATTGTGCTCTCGCTGCTCAAAATAGTGAGCGAAGTTAAGAAAAGGCGAGCAGAAAAACAAGCTAAAAGTGACTGA
>TCONS_00039257
ATCCTCCAATAGAGTGCCTTGCGGTAGTCATTCCATACAGCAATGGCAGCTTTGCAGCTCGAAAAGGAGCGAGGGCGATATGCTGCTCTGGCCATCGCTGCAGTAGTAATAATAGTGGGAATCCCGCTGTGGTGGAAAACCACCGAAACCTACCGAGCCTGGCTGCCTTTTTCGGACATCAACGAACTGGACTCGCTTCAGCTCCGGCTCAGTGTTGATATCGAGGTGGTCTTCTCTCGGGGGACACTGACCCCAGAACAGCAGAAGAAGATTCCACTTAGTCATGTCAATGAAAAAGAGCATCAAGTTGATGCTAAGACAagtttgaggtaccaatatgaaacCAGATACCGCACTGCTACTGTTATGGAAGAAGACGCCTTGAATCAGCCCACAGCTGCAGGTTCAGTGCATTTATTGGTGCTTTAATATTttatccacatttttttatgtatcaACGTATTTTCATTCCCCAAAAGTGTTTTTGTTGAACAATATAGACTAGAGAAATGTTTTAAAACCCTCCAAACGCACAAATGTATGGTTGCATCCATTTAATCTGTATAAAGAAATAtgttacaaaattaaattaaaataaataaataatggtaatAA

Function

symbol description
pigs Predicted to be involved in attachment of GPI anchor to protein. Predicted to act upstream of or within GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of GPI-anchor transamidase complex. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy. Orthologous to human PIGS (phosphatidylinositol glycan anchor biosynthesis class S).

GO:

id name namespace
GO:0016255 attachment of GPI anchor to protein biological_process
GO:0042765 GPI-anchor transamidase complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis

ZFIN:

id description
ZDB-GENE-060929-436 Predicted to be involved in attachment of GPI anchor to protein. Predicted to act upstream of or within GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of GPI-anchor transamidase complex. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy. Orthologous to human PIGS (phosphatidylinositol glycan anchor biosynthesis class S).

Ensembl:

ensembl_id ENSDARG00000017813

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038961 False 2213 mRNA 0.47 11 39583458 39604549
TCONS_00038962 False 1744 mRNA 0.50 12 39583731 39604628
TCONS_00039257 True 615 lncRNA 0.42 4 39603566 39604612

Neighbor

gene id symbol gene type direction distance location
XLOC_019797 srsf1b coding downstream 5941 39567505 ~ 39577517 (-)
XLOC_019796 dynll2b coding downstream 16604 39557433 ~ 39566854 (-)
XLOC_019795 sept4a coding downstream 36721 39512437 ~ 39546737 (-)
XLOC_019794 NA coding downstream 221282 39359151 ~ 39362176 (-)
XLOC_019793 NA coding downstream 246362 39328103 ~ 39337096 (-)
XLOC_019799 aldocb coding upstream 4009 39608637 ~ 39639954 (-)
XLOC_019800 rskrb coding upstream 41134 39645762 ~ 39670375 (-)
XLOC_019801 NA coding upstream 301275 39905903 ~ 39912107 (-)
XLOC_019802 NA coding upstream 319142 39923770 ~ 39924444 (-)
XLOC_019803 tmigd1 coding upstream 320751 39925379 ~ 39931400 (-)
XLOC_019791 CU442763.1 non-coding downstream 316152 39267225 ~ 39267306 (-)
XLOC_019782 NA non-coding downstream 950551 38629308 ~ 38632907 (-)
XLOC_019779 NA non-coding downstream 1120312 38457283 ~ 38463146 (-)
XLOC_019814 NA non-coding upstream 924159 40528787 ~ 40579807 (-)
XLOC_019825 CU570984.1 non-coding upstream 1646803 41251431 ~ 41251548 (-)
XLOC_019828 CABZ01034722.1 non-coding upstream 1746917 41351545 ~ 41351665 (-)

Expression


Co-expression Network