RNA id: TCONS_00039257


Basic Information

Item Value
RNA id TCONS_00039257
length 615
lncRNA type sense_over
GC content 0.42
exon number 4
gene id XLOC_019798
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 39583458 ~ 39604628 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCCTCCAATAGAGTGCCTTGCGGTAGTCATTCCATACAGCAATGGCAGCTTTGCAGCTCGAAAAGGAGCGAGGGCGATATGCTGCTCTGGCCATCGCTGCAGTAGTAATAATAGTGGGAATCCCGCTGTGGTGGAAAACCACCGAAACCTACCGAGCCTGGCTGCCTTTTTCGGACATCAACGAACTGGACTCGCTTCAGCTCCGGCTCAGTGTTGATATCGAGGTGGTCTTCTCTCGGGGGACACTGACCCCAGAACAGCAGAAGAAGATTCCACTTAGTCATGTCAATGAAAAAGAGCATCAAGTTGATGCTAAGACAagtttgaggtaccaatatgaaacCAGATACCGCACTGCTACTGTTATGGAAGAAGACGCCTTGAATCAGCCCACAGCTGCAGGTTCAGTGCATTTATTGGTGCTTTAATATTttatccacatttttttatgtatcaACGTATTTTCATTCCCCAAAAGTGTTTTTGTTGAACAATATAGACTAGAGAAATGTTTTAAAACCCTCCAAACGCACAAATGTATGGTTGCATCCATTTAATCTGTATAAAGAAATAtgttacaaaattaaattaaaataaataaataatggtaatAA

Function

GO:

id name namespace
GO:0016255 attachment of GPI anchor to protein biological_process
GO:0042765 GPI-anchor transamidase complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039688 lncRNA downstream 241390 39359151 ~ 39362176 (-) True XLOC_019794
TCONS_00039687 lncRNA downstream 266470 39328103 ~ 39337096 (-) True XLOC_019793
TCONS_00039686 lncRNA downstream 271938 39328103 ~ 39331628 (-) False XLOC_019793
TCONS_00038952 lncRNA downstream 530792 39069353 ~ 39072774 (-) True XLOC_019788
TCONS_00038950 lncRNA downstream 545085 39046976 ~ 39058481 (-) True XLOC_019787
TCONS_00039258 lncRNA upstream 48979 39653591 ~ 39663379 (-) True XLOC_019800
TCONS_00039259 lncRNA upstream 301291 39905903 ~ 39912107 (-) True XLOC_019801
TCONS_00039260 lncRNA upstream 319158 39923770 ~ 39924444 (-) True XLOC_019802
TCONS_00038976 lncRNA upstream 553253 40157865 ~ 40160887 (-) False XLOC_019808
TCONS_00038979 lncRNA upstream 562455 40167067 ~ 40174646 (-) False XLOC_019808
TCONS_00038960 mRNA downstream 26049 39567505 ~ 39577517 (-) True XLOC_019797
TCONS_00038959 mRNA downstream 36712 39557433 ~ 39566854 (-) True XLOC_019796
TCONS_00038958 mRNA downstream 56829 39512437 ~ 39546737 (-) True XLOC_019795
TCONS_00038957 mRNA downstream 276343 39303157 ~ 39327223 (-) True XLOC_019792
TCONS_00038956 mRNA downstream 277967 39302793 ~ 39325599 (-) False XLOC_019792
TCONS_00038963 mRNA upstream 4025 39608637 ~ 39628771 (-) False XLOC_019799
TCONS_00038964 mRNA upstream 4871 39609483 ~ 39639954 (-) True XLOC_019799
TCONS_00038965 mRNA upstream 41150 39645762 ~ 39670375 (-) False XLOC_019800
TCONS_00038966 mRNA upstream 320767 39925379 ~ 39931400 (-) True XLOC_019803
TCONS_00038967 mRNA upstream 387539 39992151 ~ 40015530 (-) True XLOC_019804
TCONS_00038955 other downstream 336260 39267225 ~ 39267306 (-) True XLOC_019791
TCONS_00038943 other downstream 873548 38727099 ~ 38730018 (-) False XLOC_019784
TCONS_00038929 other downstream 1540252 38063197 ~ 38063314 (-) True XLOC_019777
TCONS_00038902 other downstream 2530486 37072951 ~ 37073080 (-) True XLOC_019765
TCONS_00038875 other downstream 5067192 34430460 ~ 34536374 (-) True XLOC_019748
TCONS_00038972 other upstream 473339 40077951 ~ 40081929 (-) True XLOC_019807
TCONS_00038990 other upstream 798648 40403260 ~ 40411647 (-) True XLOC_019813
TCONS_00039012 other upstream 1646819 41251431 ~ 41251548 (-) True XLOC_019825
TCONS_00039016 other upstream 1746933 41351545 ~ 41351665 (-) True XLOC_019828
TCONS_00039031 other upstream 2259042 41863654 ~ 41873097 (-) True XLOC_019836

Expression Profile

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