RNA id: TCONS_00038956


Basic Information

Item Value
RNA id TCONS_00038956
length 1901
RNA type mRNA
GC content 0.47
exon number 17
gene id XLOC_019792
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 39302793 ~ 39327223 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATGATGGAGGTTGAGGTTGGTGATCACAATGTTTTGCTGGTCCGCTGTGACGGAGTGTACAGTGCCATCAGTAACCAGTGCACACACTATGGTGCTCCGTTGAGTGAAGGGGTGCTGTCGGGTTGTAGGGTGCGCTGTCCCTGGCATGGGTCCTGTTTTAATGTGAAGACTGGAGACCTGGAGGAGTATCCTGGGATTGACTGTCTGCCCTGCCACAAGGTGAAAGTCGAAAACAACAAAGTGTATGTGTCTGTAAAGAAAAGGATTCGGGGTCAGCCTAAACGTGTAAAATGGATGGGAGTCCGAGATCAGTCGGTGTCACATACTGTGATGCTCCTCGGAGGAGGCGCAGCCTGCTTAATGTGTGCTGAGACGCTACGGCAAGAAAACTATGGCGGCAGGATTATTATGGTTTCTAGAGACGACCTCCTTCCATATGACAAAACCAGACTCAGTAAGGTGATGAATGCTGAGAGCGACAGTCTGTTAATGAGAAGAATGGACTTTTTCCACAAACATGATATTGAGGTCTGGTTGAAGAAAGAGGCTTTATCAATAGACACAAACAAGAAAACAGTGACATTTGATGATGGGTTAATCCAGAGTTATGACCAAATTCTGATAGCAACTGGGTGCAGAGCAAAAGGTCTGGACTGCCCGGGTGCAAACCTGGAACGGGTGCTAATGCTAGAAACACCAGAGGATGCCAGGTGCGTCCACTATGCCTGTACGGGCTGCAGGACAGTCATCGTGGGCACTTCTTTTATTGGCATGGAAGTGGCAGCTTATTTGCTAGACACGTCCAGCAGTATGACAGTCATCGGCAGCAGTGAACTGCCCTATCAGAAGACTCTGGGCCGGGAGATAGGAAAGGTCACCATGACGATGCTGGAAGAGAAAGGGGTGACGTTCTACATGAATGATGCTGTCGCAGAAGTTCAGGGCAAAAATAGGAGGGTTAAGGCAGTGAAACTGAAGAGCGGCATCACTATTGAAGCTGATTTGTTAATTGTTGCAATTGGTGTCAGTCCGAATTCAGAGTTTCTAAAGGGGAGTCGAGTAAGAATGGACTCAAAGAACTATGTCATTGTGGATGAGTACATGAGGACCAACATAACAGACGTCTACTGTGCTGGAGATCTGACCTCCTTTCCTCTCAAAATGGCAAAAGGCCAGAAAGTGAGCCTTGGCCATTGGCAGATAGCGCAGGCACATGGAAGGATTGCAGCTCTCAACATGCTGTGCAGAGAAGTGGAGCTAAACACAGTGCCATACTACTGGACCGTCCTGTTCGGGAGAACCATTCGATACGCTGGATATGGGGAGGGATACACTGAGATGGTGCTGAAAGGGAAGTTTGAGAACATGAAGTTTTTGGCACTTTACCTCAAGGATGGTGAGGTGGTGGCTGCCGCAGGACTGAATGTTGAACCCGCCGTTTCTGTGGTGGCAGAGAGACTGGCAGAAGGAAGAGTGATTACAAAGGCAGAGGCAGAgtcaGATGACCTCAGTTGGCTGAAACTGGAGCCCATGTGACCACTGACAACAGTTTTGACTCTGAATTCAGCTATTCTGTCCACAGTACATCCCATCCAACCATGCCTTTACTCAGAAGACATTCTTCGTAACATTTAAAGGCCAATACAGTATGTTTCTCCAGGAGCTTTGTACACAGTTCACAGAGCTTGCCATTTTACCACTGATATTCAGAGACGAGAACCACTACCCACACACAACCAAAACAAGAGGAGAAGCTTTTATTCTGCTCTTACCTCAGTTCTCTTTGTGACTTTGCCAGTTAGCTCCGTTTCACATCtgtttttctcaaaaatgaaagttaacGCAATCAAATTTTTATTCTAATCAGTATTATAGATATAAAGAGAACATATTGAGCTTA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-96 Predicted to enable several functions, including 2 iron, 2 sulfur cluster binding activity; flavin adenine dinucleotide binding activity; and metal ion binding activity.

Ensembl:

ensembl_id ENSDART00000131717

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00038952 lncRNA downstream 230019 39069353 ~ 39072774 (-) True XLOC_019788
TCONS_00038950 lncRNA downstream 244312 39046976 ~ 39058481 (-) True XLOC_019787
TCONS_00039685 lncRNA downstream 572196 38727099 ~ 38730597 (-) False XLOC_019784
TCONS_00039686 lncRNA upstream 2504 39328103 ~ 39331628 (-) False XLOC_019793
TCONS_00039687 lncRNA upstream 2504 39328103 ~ 39337096 (-) True XLOC_019793
TCONS_00039688 lncRNA upstream 33552 39359151 ~ 39362176 (-) True XLOC_019794
TCONS_00039257 lncRNA upstream 277967 39603566 ~ 39604612 (-) True XLOC_019798
TCONS_00039258 lncRNA upstream 327992 39653591 ~ 39663379 (-) True XLOC_019800
TCONS_00038954 mRNA downstream 49146 39240897 ~ 39253647 (-) True XLOC_019790
TCONS_00038953 mRNA downstream 125229 39121453 ~ 39177564 (-) True XLOC_019789
TCONS_00038951 mRNA downstream 221686 39067512 ~ 39081107 (-) False XLOC_019788
TCONS_00038949 mRNA downstream 244303 39029713 ~ 39058490 (-) False XLOC_019787
TCONS_00038948 mRNA downstream 278039 39005905 ~ 39024754 (-) True XLOC_019786
TCONS_00038958 mRNA upstream 186838 39512437 ~ 39546737 (-) True XLOC_019795
TCONS_00038959 mRNA upstream 231834 39557433 ~ 39566854 (-) True XLOC_019796
TCONS_00038960 mRNA upstream 241906 39567505 ~ 39577517 (-) True XLOC_019797
TCONS_00038961 mRNA upstream 257859 39583458 ~ 39604549 (-) False XLOC_019798
TCONS_00038962 mRNA upstream 258132 39583731 ~ 39604628 (-) False XLOC_019798
TCONS_00038955 other downstream 35487 39267225 ~ 39267306 (-) True XLOC_019791
TCONS_00038943 other downstream 572775 38727099 ~ 38730018 (-) False XLOC_019784
TCONS_00038929 other downstream 1239479 38063197 ~ 38063314 (-) True XLOC_019777
TCONS_00038902 other downstream 2229713 37072951 ~ 37073080 (-) True XLOC_019765
TCONS_00038875 other downstream 4766419 34430460 ~ 34536374 (-) True XLOC_019748
TCONS_00038972 other upstream 752352 40077951 ~ 40081929 (-) True XLOC_019807
TCONS_00038990 other upstream 1077661 40403260 ~ 40411647 (-) True XLOC_019813
TCONS_00039012 other upstream 1925832 41251431 ~ 41251548 (-) True XLOC_019825
TCONS_00039016 other upstream 2025946 41351545 ~ 41351665 (-) True XLOC_019828
TCONS_00039031 other upstream 2538055 41863654 ~ 41873097 (-) True XLOC_019836

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000041_00232436_00243075.mRNA True 2221 mRNA 0.44 18 CI01000041 232436 ~ 243576 (+)