RNA id: TCONS_00038958


Basic Information

Item Value
RNA id TCONS_00038958
length 1859
RNA type mRNA
GC content 0.50
exon number 12
gene id XLOC_019795
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 39512437 ~ 39546737 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCGCTGCAAGTGAACGCGACGCGCAGCTCTCACTGATTGACTTGAGCTTGTCAGATCGCACTGCTCTGTCCGTGCTGTACCTTTGATTTCCTCCGTTTATCCCGGACGTTTAGAGGGTCAGAAAAGTTGCGTTAACATAACTGCGTAGATTTGACCTCTATCTGTCTCGGAAATTTAGCCAAACATCAGCAGCACTGACCAGGTGGATGTGAACTCCCTCCGCTAACATGGAGCACCTGTCGTCCACCACCAACCGCTTCGTGAATGCCATGTACAGGCAGCGCGTTGTCTAGTTTAGCCATAGAAGACTGTGAGGATGCAGAATTGGCCTACACCATGAGAGATCTGCCCCCTCGAGCTGCTCACACCTTCCCTGAGAACCAGACGATGGACAGACAGCCAGACGGCAGCACCGCTCCTCACACTCCTGGGACGCCCACAACCACACGGCCCATCAACAGAAGTTTCCTGGGCTCTGAACAGGAGTTATTCCGCCGCGGCCAGCTCAGCTCTGTCAGCTCTCTGGACTCTCCCCTCAGCCCCTCTCGCCCCAAAAGTCCATGGGCCAGATTTGACCCCTATGACTCTGCTGAGgaTCAGGATAAGGAGTATGTTGGCTTTGCAACGCTGCCCAACCAAGTGCACAGGAAATCTGTGAAAAAAGGTTTTGCCTTTACTCTTATGGTGGCAGGAGAGTCCGGTTTAGGGAAATCCACACTGGTCAACAGTCTCTTTCTCACAGACCTTTATAAAGACCGGAAGATGCCGAATGCTGAGGAGCGGATTGCTCAGACTGTGGAGATCACCAAACACACTGTGGCCATAGAGGAGAAAGGAGTCAAGCTGCGACTCACCATTGTGGACACACCAGGATTCGGTGATGCTGTCAACAACACAGAGAGCTGGAGGGCAATTGTGGACTACATTGACCAGCAGTTTGAGCAATACTTTCGTGACGAAAGCGGCCTCAACCGTAAGAACATCCAGGACAATCGTGTGCACTGCTGCCTCTACTTCATCTCGCCCTTCGGCCACGGTCTCAGACCAATTGATGTGGAGTTCATGAAGATTCTCCATGAGAAAGTCAACATAGTGCCTGTGCTGGCCAAAACCGACAGTCTAACTCCAGAGGAAGtcagaaaaatgaaaatgaagATTCGAGAGGAGATCGAGAGATTTGACATTATGATCTACCAGTTCCCTGAGTGTGAATCAGATGAGGAAGACGAGTTCAAACtccagcagcaggaactgaagGATAGCGTTCCCTTTGCGGTAATTGGCAGTAATGTTCAAGTTGAAAGCCAGGGCAGGCGGTTCAGAGGCCGGCAGTATCCCTGGGGTTTGGTGGAAGTGGAGAATCCTGAGCACTCCGACTTCCTGAAGCTGAGGAACATGTTGGTTCGCACACACATGCAGGACCTGAAGGACGTGACGAGGGAAACGCATTATGAAAATTACCGCGCTCAGTGCATCCAGAATATGACCCGCATGGTGGTCAGAGAGAGGAAACGCAGTCTGAATAGCCGGCTGAGAGAGAGCCCGTCAGATCTTCCTGTGCCTCTGGTGCCTGTGGACACTGAAACTGAGCGCCTTATTTGGGAGAAAGATGAAGAGTTGCGTCGAATGCAGGAGGTTCTGGAAAGGATTCAGGAACAGATGCGTCAAGGACATGAAGATTTACCCattaattgaaatgtatttagGATGAGATTTCACAAGCTTAACATGGAGGAAACTGAAGTGAATGTATGCTTTTAGCTTTCAGAATCTTTAGAGCTTTGGCTGACAACAGAACCTTTAATGTAAATATGAACAACTGTTGTGGTACATGAGAAATAAGACCAGTACAACTTGA

Function

GO:

id name namespace
GO:0017157 regulation of exocytosis biological_process
GO:0034613 cellular protein localization biological_process
GO:0061640 cytoskeleton-dependent cytokinesis biological_process
GO:0032153 cell division site cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0031105 septin complex cellular_component
GO:0005940 septin ring cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0060090 molecular adaptor activity molecular_function
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051120-87 Predicted to enable GTPase activity and molecular adaptor activity. Predicted to be involved in cellular protein localization; cytoskeleton-dependent cytokinesis; and regulation of exocytosis. Predicted to be part of septin complex. Predicted to be active in cell division site; cytoskeleton; and synaptic vesicle. Orthologous to human SEPTIN4 (septin 4).

Ensembl:

ensembl_id ENSDART00000006971

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039688 lncRNA downstream 150261 39359151 ~ 39362176 (-) True XLOC_019794
TCONS_00039687 lncRNA downstream 175341 39328103 ~ 39337096 (-) True XLOC_019793
TCONS_00039686 lncRNA downstream 180809 39328103 ~ 39331628 (-) False XLOC_019793
TCONS_00038952 lncRNA downstream 439663 39069353 ~ 39072774 (-) True XLOC_019788
TCONS_00038950 lncRNA downstream 453956 39046976 ~ 39058481 (-) True XLOC_019787
TCONS_00039257 lncRNA upstream 56829 39603566 ~ 39604612 (-) True XLOC_019798
TCONS_00039258 lncRNA upstream 106854 39653591 ~ 39663379 (-) True XLOC_019800
TCONS_00039259 lncRNA upstream 359166 39905903 ~ 39912107 (-) True XLOC_019801
TCONS_00039260 lncRNA upstream 377033 39923770 ~ 39924444 (-) True XLOC_019802
TCONS_00038976 lncRNA upstream 611128 40157865 ~ 40160887 (-) False XLOC_019808
TCONS_00038957 mRNA downstream 185214 39303157 ~ 39327223 (-) True XLOC_019792
TCONS_00038956 mRNA downstream 186838 39302793 ~ 39325599 (-) False XLOC_019792
TCONS_00038954 mRNA downstream 258790 39240897 ~ 39253647 (-) True XLOC_019790
TCONS_00038953 mRNA downstream 334873 39121453 ~ 39177564 (-) True XLOC_019789
TCONS_00038951 mRNA downstream 431330 39067512 ~ 39081107 (-) False XLOC_019788
TCONS_00038959 mRNA upstream 10696 39557433 ~ 39566854 (-) True XLOC_019796
TCONS_00038960 mRNA upstream 20768 39567505 ~ 39577517 (-) True XLOC_019797
TCONS_00038961 mRNA upstream 36721 39583458 ~ 39604549 (-) False XLOC_019798
TCONS_00038962 mRNA upstream 36994 39583731 ~ 39604628 (-) False XLOC_019798
TCONS_00038963 mRNA upstream 61900 39608637 ~ 39628771 (-) False XLOC_019799
TCONS_00038955 other downstream 245131 39267225 ~ 39267306 (-) True XLOC_019791
TCONS_00038943 other downstream 782419 38727099 ~ 38730018 (-) False XLOC_019784
TCONS_00038929 other downstream 1449123 38063197 ~ 38063314 (-) True XLOC_019777
TCONS_00038902 other downstream 2439357 37072951 ~ 37073080 (-) True XLOC_019765
TCONS_00038875 other downstream 4976063 34430460 ~ 34536374 (-) True XLOC_019748
TCONS_00038972 other upstream 531214 40077951 ~ 40081929 (-) True XLOC_019807
TCONS_00038990 other upstream 856523 40403260 ~ 40411647 (-) True XLOC_019813
TCONS_00039012 other upstream 1704694 41251431 ~ 41251548 (-) True XLOC_019825
TCONS_00039016 other upstream 1804808 41351545 ~ 41351665 (-) True XLOC_019828
TCONS_00039031 other upstream 2316917 41863654 ~ 41873097 (-) True XLOC_019836

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000041_00107213_00125545.mRNA True 1695 mRNA 0.48 13 CI01000041 107213 ~ 125758 (+)