RNA id: TCONS_00038949


Basic Information

Item Value
RNA id TCONS_00038949
length 1763
RNA type mRNA
GC content 0.49
exon number 11
gene id XLOC_019787
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 39029713 ~ 39058490 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAACGGAACAGAGTTGTTTAATGTTTACCATCGTCAGCTTAACTGAACTATCAGATCCGATAGCTTCTTCTGAGCGCCACACCATTAAACACAGACAAACGTGGAAGCTCTGCGAAATAACACAAGtatgtctcgaGAGCAGAAAGCAGTGGAACGTGCCAGAAAGGCCTTCTTTACTGGCCGAAGCAAATCTCTGGAGTACCGCATTTCGCAGCTGAAAAACCTGCAGCGTTTTATGCAAGAACGACAGAAGGAAATCGCAGAAGCCCTCAAAAAGGATCTCAAACGGAGTGAGTTTGGGACTTCTTTATATGAGACCCTGGGTGTGGAGAGTGAGATTAATCTGGCTTTAAAAAAGCTGAAAGAATGGGCTGCTCCTCGACCTGTGAACAAGAGCCTAATGACCATCTCAGACCAGGTCTACATCCAACCTGAGCCTCTGGGAGTGGTGCTAATCATCGGTGCTTGGAATTACCCCTGGGCAGTCACCGTCGGGCCCCTCGTAGGAGCCATAGCTGCAGGTAATGCAGCAGTGATCAAACCATCTGAAGTCAGTGCTCACACTTCCAAAGTAATGGAGGAGTTTTTACCGCTCTACCTGGACAAAGAGTTGTACCCTGTAGTGACGGGTGGTGTGAAAGAGACGCAGGAGCTCCTCAAGCAGCGTTTTGATCACATCTTCTACACTGGAAACGGCATGGTGGGTAAAATCATCATGGAGGCGGCAGCGAAACACTTAACACCTACCACACTGGAGCTGGGCGGAAAGAGCCCGTGCTACATCGACAAAGACTGTGACCTCACCATCGCCTGCAGGCGGATTGCGTGGGGAAAATACTCAAACTGTGGACAGACCTGCATCGCTCCAGACTACATACTGTGTGATCCTAGCATACAGGACAGGGTGATCGAGGAGATCAAGAAGAACATCAAAGAATTCTACACAGAAAACCCACAGAAATGTCCAGATTACGGCCGAATCATCAATCAGCGGCACTTCAAGAGACTGATGTCACTAATGGAGGGCAGCAGCATCGCTGTGAGCGGCGAACACAACGAGGCAGAGTGCTACATCGCTCCAACAGTGCTGAGAGACGTGAAGCCTGATGCCAAGGTGATGCAGGAGGAGATCTTTGGCCCTCTGCTGCCCATCGTGACTGTGAACAGTGTAGATGAAGCCATCAAATTCATCAACCAGAGGGACAAGCCCCTCGCATTGTACATCTTTTCTTCAGACAAGAAGTTGATCGACAGAATGATAGCGGAGACATCTAGTGGTGGACTGATGGCCAATGACTGTTTGATGCACTTCTCTGTCAGCTCTCTGCCTTTTGGTGGAGTTGGTGACAGTGGTATGGGCCGCTATCACGGCAAGCATGGCTTTGATAACCTGAGCCACATGCGTGGGGTTCTGCTCAAGCAGCTGAAGATGGAGGCGGTCAATAAGATGCGTTATCCTCCGCACACTGCAGATAAACTGGGCTGGGCTCGATTCTTCATAGTCAGACATGTTGACTTCGGCAGCCTAGGCCGCATGGCGATGCTGGCTCTGATGGTGGTGTTTGCTGCAGTCATCATACAGaaatattttACTGACTAAGAATGTGAATAATATGAAGAAACCTTCCCTTCACCTGAAGCTCTGGTCAGACGGTGGGTGGATGGGCCTGAAGTGCTGCTTCTCTCCTTTGCCTTAGTTTCAATATAATGTCCGTCATTCATTTCAATCATTACAACAATATCTAGAGCACTTTAATCAGTGA

Function

GO:

id name namespace
GO:0006081 cellular aldehyde metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0004028 3-chloroallyl aldehyde dehydrogenase activity molecular_function
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-103 Predicted to enable 3-chloroallyl aldehyde dehydrogenase activity. Predicted to act upstream of or within cellular aldehyde metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in intestinal bulb; liver; and notochord. Human ortholog(s) of this gene implicated in Sjogren-Larsson syndrome and arteriosclerosis. Orthologous to human ALDH3A1 (aldehyde dehydrogenase 3 family member A1) and ALDH3A2 (aldehyde dehydrogenase 3 family member A2).

Ensembl:

ensembl_id ENSDART00000114885

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00038942 lncRNA downstream 299116 38726202 ~ 38730597 (-) False XLOC_019784
TCONS_00039685 lncRNA downstream 299116 38727099 ~ 38730597 (-) False XLOC_019784
TCONS_00038945 lncRNA downstream 299116 38728867 ~ 38730597 (-) True XLOC_019784
TCONS_00038944 lncRNA downstream 299150 38728157 ~ 38730563 (-) False XLOC_019784
TCONS_00039684 lncRNA downstream 396806 38629308 ~ 38632907 (-) True XLOC_019782
TCONS_00038952 lncRNA upstream 10863 39069353 ~ 39072774 (-) True XLOC_019788
TCONS_00039686 lncRNA upstream 269613 39328103 ~ 39331628 (-) False XLOC_019793
TCONS_00039687 lncRNA upstream 269613 39328103 ~ 39337096 (-) True XLOC_019793
TCONS_00039688 lncRNA upstream 300661 39359151 ~ 39362176 (-) True XLOC_019794
TCONS_00039257 lncRNA upstream 545076 39603566 ~ 39604612 (-) True XLOC_019798
TCONS_00038948 mRNA downstream 4959 39005905 ~ 39024754 (-) True XLOC_019786
TCONS_00038946 mRNA downstream 175976 38849851 ~ 38853737 (-) False XLOC_019785
TCONS_00038947 mRNA downstream 176853 38849881 ~ 38852860 (-) True XLOC_019785
TCONS_00038940 mRNA downstream 299072 38724046 ~ 38730641 (-) False XLOC_019784
TCONS_00038941 mRNA downstream 299156 38724050 ~ 38730557 (-) False XLOC_019784
TCONS_00038951 mRNA upstream 9022 39067512 ~ 39081107 (-) False XLOC_019788
TCONS_00038953 mRNA upstream 62963 39121453 ~ 39177564 (-) True XLOC_019789
TCONS_00038954 mRNA upstream 182407 39240897 ~ 39253647 (-) True XLOC_019790
TCONS_00038956 mRNA upstream 244303 39302793 ~ 39325599 (-) False XLOC_019792
TCONS_00038957 mRNA upstream 244667 39303157 ~ 39327223 (-) True XLOC_019792
TCONS_00038943 other downstream 299695 38727099 ~ 38730018 (-) False XLOC_019784
TCONS_00038929 other downstream 966399 38063197 ~ 38063314 (-) True XLOC_019777
TCONS_00038902 other downstream 1956633 37072951 ~ 37073080 (-) True XLOC_019765
TCONS_00038875 other downstream 4493339 34430460 ~ 34536374 (-) True XLOC_019748
TCONS_00038861 other downstream 5892630 33136948 ~ 33137083 (-) True XLOC_019739
TCONS_00038955 other upstream 208735 39267225 ~ 39267306 (-) True XLOC_019791
TCONS_00038972 other upstream 1019461 40077951 ~ 40081929 (-) True XLOC_019807
TCONS_00038990 other upstream 1344770 40403260 ~ 40411647 (-) True XLOC_019813
TCONS_00039012 other upstream 2192941 41251431 ~ 41251548 (-) True XLOC_019825
TCONS_00039016 other upstream 2293055 41351545 ~ 41351665 (-) True XLOC_019828

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000041_00424049_00434384.mRNA True 3500 mRNA 0.41 10 CI01000041 422309 ~ 434674 (+)