lbx1a (LOC105005765)


Basic Information

Item Value
gene id lbx1a
gene name LOC105005765
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 68215999 ~ 68218542 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609385.2
AAGgagtgacaaagagagagaaagtgggggaagaaagagtgagggagagagagtgtgtgcatgtgtgtcagtgTCCATAATTGATTACCTTCCAATCTACAATAACTTGTTAGTGGTGGTCAATTGCGGCTGCTTTTTGGGAATCACTGTCCACCGGATGGTTTCATGTTGTGGCTCGTGCGTCACCCCGTAACAGTAGACAGGAGAAGTGGGACTTTAACTGGACTCAAAGTCTCCCTACCCTGCGGCAAAGCGACCAACATGCGGTTGCAGAAGCACCTGTGATCGGATTTCCATTCTCCACATTTCCCACAACTTTTCATTTAGGCATACTTATTTTGAAGTATAACCAGAGCATAAACAAATCTCCGAAGTGTCACCTGATAAACTACTATGACCTCCAAAGATCCCACGGTTATGGAGGACCGGAGACGCAATGCGCTGGACCAGCTTCCGCCGCCGGCCAACTCCAACAAGCCCCTGACGCCATTCAGTATAGAGGACATCCTGAACAAGCCCTCGGTAAAGAGAAGTTATTCTAGCTGCGGGACGGCGCACCTGCTCTCCTCCAGCGAGAAGCTGTCCTCTTCAGGGCATAGCCTGTCCAGCCGGGCCCTTTTCACCCAAACCTCCCCGCTCTGCGCTCTGGAGGAGCTCGCCAGCAAAACCTTCAAAGGGCTCGAAGTCAGTGTTCTTCAAGCGGCGGAGGGCCGAGACGGCACGACACTATTCGGTTCGCGGAATAACCCCAAAAAGCGCCGGAAGTCTCGCACCGCCTTCACCAACCACCAGATCTACGAGTTGGAAAAGCGCTTCCTTTACCAGAAGTACCTGAGTCCAGCTGACCGCGACCAGATAGCACAGCAGCTCGGCCTCACCAACGCGCAGGTCATCACCTGGTTCCAAAACCGGCGCGCCAAGCTCAAACGCGACCTGGAGGAGATGAAGGCGGACGTGGAGTCGGCCAAAGCCGTGGGAACCGTGTCGTTTGAGAAGATGGCCAAACTAGCCGAACTGGAGAAATGCGCAGCTAACGGGGCGCTGGGCCCTAACAGATCTGAGTCACCCTCGTTATCGAACCATGAGCGCAACGCCTCGAACAAACTCTTATTGTCCTCCCCTTCGTCGCCATATACAGACCATACTAGCAGCAAGGGCTGCTCCGAGGATGAGGAGATTGACGTGGATGACTGAGGATTTTACCATTGTATCTCTTACCACGACTAAAGTTTGAAGTGCCATTTATGCACCACATCATGAGGCTTTTATGAAGAACACTTAGCATCGCATGGACTGTGTCTTATATGCAACAACAGATGCAGACAGTTATTGTATTCATCCATTCATTTAACCAACGTGGAATAGTTTAAAGAAAAGCAATATGTATTTTATCCACAAATGatctgcccacacacacacacacacaatcttcccGGTATGAGTTAATACCACTAGCTAATAACTCAACCTATGAATCATTTCAATGCATGTTTTCTTTTTGTTTAACTTAATTGTAATTTAAACGACTGTTGGTTTGAATATTACACAGAGGCATTCAGATTGAAAAACAACACACATCATATGCTAGGTGTTATAACTATATCGTAAGCCTACATATTTAAACCGTTTGATAACGATGGGAAGACATTTTCTAAGATAATAATCAAAGATAAATCCTATTCCATCTGGTTGCTTGTAATATCAGTCACATTTTAATATATTTATAATGGTTTGCGAACCTGTAAGTGCCTTTCAATGCCAGCACACCATTTTAAACATAATGTATAAAGTGTAATGTAtttcaaaataaaacatttcgTTTCTCACTATTCCTCATAGACCACTTATTTTAGTAGCA

Function

NR:

description
transcription factor LBX1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09353 LBX; homeobox protein LBX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609385.2 True 1858 mRNA 0.46 2 68215999 68218542

Neighbor

gene id symbol gene type direction distance location
tlx1 LOC106576912 coding downstream 47042 68162832 ~ 68168957 (-)
sdhaf4 LOC106576700 coding downstream 53975 68157900 ~ 68162024 (-)
LOC110527795 LOC106576701 coding downstream 63983 68142952 ~ 68152016 (-)
LOC110527775 LOC106576703 coding downstream 98310 68104128 ~ 68117689 (-)
LOC110527765 LOC100194528 coding downstream 129883 68078150 ~ 68086116 (-)
cyp17a1 cyp17a1 coding upstream 183040 68401582 ~ 68404726 (-)
nt5c2a nt5c2 coding upstream 190971 68409513 ~ 68433891 (-)
pcgf6 pcgf6 coding upstream 219531 68438073 ~ 68444855 (-)
LOC110527905 LOC106576688 coding upstream 230187 68448729 ~ 68460372 (-)
calhm2.1 calhm2 coding upstream 241558 68460100 ~ 68463774 (-)
G75665 NA non-coding downstream 8867 68206816 ~ 68207132 (-)
G75664 NA non-coding downstream 9939 68205844 ~ 68206060 (-)
G75612 LOC106576702 non-coding downstream 73519 68138795 ~ 68142480 (-)
G75539 NA non-coding downstream 223971 67985167 ~ 67992028 (-)
LOC110532597 NA non-coding downstream 263282 67897706 ~ 67953556 (-)
G75764 NA non-coding upstream 13690 68232232 ~ 68285627 (-)
G75782 NA non-coding upstream 39063 68257605 ~ 68280269 (-)
G75846 NA non-coding upstream 152196 68370738 ~ 68370943 (-)
G75848 NA non-coding upstream 153900 68372442 ~ 68372903 (-)
G75852 NA non-coding upstream 158713 68377255 ~ 68377755 (-)
G75682 NA other downstream 4293 68210180 ~ 68211706 (-)
LOC110527687 sncg other downstream 534269 67669589 ~ 67681775 (-)
LOC110527584 LOC106576720 other downstream 827955 67386509 ~ 67389299 (-)
LOC110527436 ppp2r5d other downstream 1205412 66965664 ~ 67010646 (-)
LOC110527951 coda1 other upstream 357051 68575379 ~ 68690343 (-)
LOC118965321 LOC106576963 other upstream 1864298 70082835 ~ 70088715 (-)
G78414 NA other upstream 2136374 70354916 ~ 70355591 (-)
G79616 NA other upstream 3103408 71321950 ~ 71386523 (-)
G79700 NA other upstream 3251140 71469435 ~ 71470755 (-)

Expression


Co-expression Network