tlx1 (LOC106576912)


Basic Information

Item Value
gene id tlx1
gene name LOC106576912
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 68162832 ~ 68168957 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609364.2
ATGGATCATATTGGAGCGCATCTCCAGCACATTCACGCGGAGCCCATCAGCTTCGGGATCGACCAAATCCTTAACAATGTGGACCAAAGCTGCATGCTCGGCGATCGGATGCCCGAGCCGGACTATGGCCTCGGCTGCGTCGTCAGCACCgcctacaacaccatgaccagtaACTTCACCGGCGACAACTCTGGATATAACGGTAACGCATGTGGGGTCGCCAATCTGAGCGGCACCTATAACATGAACATGGGGATGAACGTCAGTGGGAATAACGTTAACGCAGCTGGAGTCATCCGTGTGCCCGCGCACCGGCCTCTGAACAGTGGACACTCGTCCATCCCCTACGGCATGTCCACGATGCCAGGCTCGATTAACAACCTGACGGGATTTACATTCCCCTGGATGGAGAGTAACAGAAGATACACCAAAGACAGGTTCACCGTGGCGCTCTCACCCCTCACTGTAACACGTCGTGTAGGTCACCCGTACCAGAACCGGACGCCCCCCAAGAAGAAAAAGCCCCGGACGTCTTTTACACGCCTGCAGATCTGCGAGCTGGAGAAACGCTTTCACCGACAGAAGTACCTGGCTTCCGCAGAGCGAGCGGCTTTGGCCAAGGCCCTCAAGATGACTGACGCACAAGTCAAAACATGGTTCCAGAACAGAAGAACAAAATGGAGGCGGCAGACAGctgaggagagagaagcagagcgACAGCAGGCCAACCGGATCCTCATGCAACTCCAACAGGAGGCTTTTCAGAAAACGATAAACCAACCGGCAAACCCGGACCCGCTCTGCCTGCATAACAGCTCCCTGTTCGCGCTTCAGAACCTCCAGCCATGGACTGAGAACACCGCCAAAATCAGCAGCGTGTCCGCCTGCGAATAACAAACTCTGACCGCATTTATTTTCTCTTCTTTTTGAAAGTGAGTGGAGTCATAGCGAACAACTTTTTAAGATCATCAACTTGAAAAATATGACTCAAGAGGACCTGGATTTATCTGACTGCCTCAAAAAAGGTTTAGGTTGAAAGCATGGAGTGAACAAGGAGCTCATAGCCACCGGAAGTAGGGGTGTTGATAAATCATAATtaaatacacatatacatacatacacatacatatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaatcaacaATATATATAAATCACCAAATTAGTGCACTGGACCTTAATGACTCCTGTATGAGTGGAGAAAAATACTCGTTAATGCGGGGATATGTTTTCTTTCTCAGCACCCCCACCCGGAAAAATCTTCCTGCAGCCATGCACGAGTCCATTAGCAACATGCTTTTAGAGGACTGTGCAATAGTTCACCTTATCTTCCTGCTTTCAGGTGATAACATTTTTAGCAGTTGTATTAATTGTAATTTTTCAATCAAATATAGTCCAGTTCTAACTATGAACTAAGACTATAGCTAGATTCAAATAAGTGAGCACTTCTTTTAGCACTTTTCTCCTAGAGGAAAACTTTGACATATTCATTCATACCTGATCATTTGAGGAATAGGCCTAATTCAAGAAAAATGTATTGGTTTCAAAAATATGAATTTGCTGGTATAGATTCACTAGCCTGCCTGTGTCTCATAACAGTGATGTTTATATCAACCGTTTATATTGACAGCGATGGTTATGAATCGCTTTTAGCAGTTATGCAACCCCTTTACCTCTTTGCAAGGGAAGAATCAGTGGCAAAAGGTTCAAATGTACCACCTCATCAAGTTTCTGTTATAAATTATTCATGATCTTTGACCTCTTACCACATTACACAAGCACTTACTAATTTGGATTATACTTTATTGCACTCCACTATTTACCTGGTATTTGCAGAAATTGGGTTATACAGTTGCCTGATCATTATACAATATTATTTGTTGTCTTTGTCTTTCAAACAAGCACAATGTTAGCAATATGAACATGGCTTTGAATTTGTTGAAGTGTAAATGTATTGTTTTTTCGTTAAGTAGCCTATCCATTGTTACTGCATAATGTAATTTCTTAATAAATACCAGGTAAACAGCTGAATTATGACTGTAACATAAGGTGTTATTTGTTCAACTTTCTTGTACTCTATAATCCTATAATAATTTCAGTTATGTTGATCCATTTATACGTATAATGAAAGGCTAGAATTATAAGGccatatgaaatatattttaaaataattaATACAGTTGTACTTTGTGTATTTGTCATATTTTGTTTTAAACCAATGATCATGCTTCATGGAGTACATGGAGTGAACTACATTGCTGTGTATGGGACAACTGATGGCCAAAGCCCTCTTTGACTATAGGATCCATCCCTGATATACCTGCCCTCTATTAGTCAATACCAGACCTTTATAATGGGTGTTTCCAGCAAGTGATTGATACTGGTTGCATGATCATGATGAATGTCTACATTTTGGAATATGCAGctgtgtattttgtgtgttagTTAACATTCATTGCAACtgtaaagtgtgtgtatgtgtgtgttgatcGTATCCAGCTGTAGGACAGTGTGTTTGTGAGTTAGTCCAGGGCCTCTCCCCATGGTCAAAAAGGAATGTAGGGTAGAATTGCCTCATCTACTCGGAAATATCAGCACTGCAGCGTCACTTAAGTGGCTTTCCCCAAACTCCTGAAATTCTTAAACCGAGCAGGCATGATGGCTTTCAGTTTTTTTCAAAGCCCTCAATGAAAAAAGGTGGTAAAAATGGCTGAAAATGTAAAAGAAGTGGACAAGTGCAGTGAGCGGCAGATTGAGAGCTTAATATGTAAGCAAGCATAACACCTTCCATTTTGTTCGTTGTCCTCAGCCTTTTCAGTTTTAGTTTGATCCGTATTCTTTATTTATGGCTTCATTAAATTACAATTATTTAGGCTTGTTTTATGTCATCAAATACAGTTCCTTGCATGCATTTCATTACTGAAGTAATATGTTATTGTATTTCTACCAAGTGAGCGTTTACTGTTTGTTTTGTCTGCCACAATTCAGTTGCAAATCCACAATCTAACAACATTCGTATATCTTGACACAGCCACAAATAATGTTCAGTTCTTGTGCTACTGCTATTATTCGGCACCCTCTTTTGTACCGTATGAAATGTGTTCATTTCCACAAACATGTTCTACGTTTGATCTCACTGCGCTTTGCTTCCTTATGATCTGTAATGCTGCAATGCATTCATAACTACACAATCTCCAAATTAGCATTAACGAGGACTTACAGCTTAGTATCCTGTTTATAGCAGTAATGTATGATTCTGCCACAGTAAGTCACAGAAGCCCATGCATTTTTCATTCACCACCAGGAAAATAAAGCAGTATATTCTTAACATCATCAATAAGAAGTTGAAACATAATTATCAATTAACCGATCTCTGTCATGTCCTTCATTGCTACAATTAATTTGCAATGAATCCTATTGCTATATAAAAATGATTGTATGACTCAAATTAGCTACAGTATAATCTATTCTTGGCTTTACACACATACGAATCACTGTACCATTCAAAGCCATTGTGTAGTCTATGTCTCTGAATTTGAAATGTATGAATGGACcgagttttttttttctcattttgaacTGCATGCAAAAATCAATTGTCTATTGCAGACTTTATTCTGCAATCATTGTTTAATCATATTCTTGAACAGAATATGGCAATTTgtatgttacattttttttattaaatgaTTCATGCTTTTG
>XM_021609374.2
GTCTCCAGCCAATTGAGTCTCGAGGCCTAAAAATGGGGCTTAATCTCGTGCTGCCTATTTGGCATTTTGATTGATGCTCCACTCCAGTCGGCAAGGCTGCCCGAGCCAAAAGGGAAGACGAAAAAAACAGACAATCGCTTTTAGTATagcctcactctcacacacttacactctcacaaacacgcacacacacgcacacacacccacacacacacgtattagATAACGACTGGAGCGAGAGCTGAAGACGTTTTAAAGGACCAAGATAAGGCGCGCTGCGTGGAGCACCTCTGTACCTCGCGGGGGGCTCGCGGGGGCCATGGATCATATTGGAGCGCATCTCCAGCACATTCACGCGGAGCCCATCAGCTTCGGGATCGACCAAATCCTTAACAATGTGGACCAAAGCTGCATGCTCGGCGATCGGATGCCCGAGCCGGACTATGGCCTCGGCTGCGTCGTCAGCACCgcctacaacaccatgaccagtaACTTCACCGGCGACAACTCTGGATATAACGGTAACGCATGTGGGGTCGCCAATCTGAGCGGCACCTATAACATGAACATGGGGATGAACGTCAGTGGGAATAACGTTAACGCAGCTGGAGTCATCCGTGTGCCCGCGCACCGGCCTCTGAACAGTGGACACTCGTCCATCCCCTACGGCATGTCCACGATGCCAGGCTCGATTAACAACCTGACGGGATTTACATTCCCCTGGATGGAGAGTAACAGAAGATACACCAAAGACAGGTTCACCGGTCACCCGTACCAGAACCGGACGCCCCCCAAGAAGAAAAAGCCCCGGACGTCTTTTACACGCCTGCAGATCTGCGAGCTGGAGAAACGCTTTCACCGACAGAAGTACCTGGCTTCCGCAGAGCGAGCGGCTTTGGCCAAGGCCCTCAAGATGACTGACGCACAAGTCAAAACATGGTTCCAGAACAGAAGAACAAAATGGAGGCGGCAGACAGctgaggagagagaagcagagcgACAGCAGGCCAACCGGATCCTCATGCAACTCCAACAGGAGGCTTTTCAGAAAACGATAAACCAACCGGCAAACCCGGACCCGCTCTGCCTGCATAACAGCTCCCTGTTCGCGCTTCAGAACCTCCAGCCATGGACTGAGAACACCGCCAAAATCAGCAGCGTGTCCGCCTGCGAATAACAAACTCTGACCGCATTTATTTTCTCTTCTTTTTGAAAGTGAGTGGAGTCATAGCGAACAACTTTTTAAGATCATCAACTTGAAAAATATGACTCAAGAGGACCTGGATTTATCTGACTGCCTCAAAAAAGGTTTAGGTTGAAAGCATGGAGTGAACAAGGAGCTCATAGCCACCGGAAGTAGGGGTGTTGATAAATCATAATtaaatacacatatacatacatacacatacatatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaatcaacaATATATATAAATCACCAAATTAGTGCACTGGACCTTAATGACTCCTGTATGAGTGGAGAAAAATACTCGTTAATGCGGGGATATGTTTTCTTTCTCAGCACCCCCACCCGGAAAAATCTTCCTGCAGCCATGCACGAGTCCATTAGCAACATGCTTTTAGAGGACTGTGCAATAGTTCACCTTATCTTCCTGCTTTCAGGTGATAACATTTTTAGCAGTTGTATTAATTGTAATTTTTCAATCAAATATAGTCCAGTTCTAACTATGAACTAAGACTATAGCTAGATTCAAATAAGTGAGCACTTCTTTTAGCACTTTTCTCCTAGAGGAAAACTTTGACATATTCATTCATACCTGATCATTTGAGGAATAGGCCTAATTCAAGAAAAATGTATTGGTTTCAAAAATATGAATTTGCTGGTATAGATTCACTAGCCTGCCTGTGTCTCATAACAGTGATGTTTATATCAACCGTTTATATTGACAGCGATGGTTATGAATCGCTTTTAGCAGTTATGCAACCCCTTTACCTCTTTGCAAGGGAAGAATCAGTGGCAAAAGGTTCAAATGTACCACCTCATCAAGTTTCTGTTATAAATTATTCATGATCTTTGACCTCTTACCACATTACACAAGCACTTACTAATTTGGATTATACTTTATTGCACTCCACTATTTACCTGGTATTTGCAGAAATTGGGTTATACAGTTGCCTGATCATTATACAATATTATTTGTTGTCTTTGTCTTTCAAACAAGCACAATGTTAGCAATATGAACATGGCTTTGAATTTGTTGAAGTGTAAATGTATTGTTTTTTCGTTAAGTAGCCTATCCATTGTTACTGCATAATGTAATTTCTTAATAAATACCAGGTAAACAGCTGAATTATGACTGTAACATAAGGTGTTATTTGTTCAACTTTCTTGTACTCTATAATCCTATAATAATTTCAGTTATGTTGATCCATTTATACGTATAATGAAAGGCTAGAATTATAAGGccatatgaaatatattttaaaataattaATACAGTTGTACTTTGTGTATTTGTCATATTTTGTTTTAAACCAATGATCATGCTTCATGGAGTACATGGAGTGAACTACATTGCTGTGTATGGGACAACTGATGGCCAAAGCCCTCTTTGACTATAGGATCCATCCCTGATATACCTGCCCTCTATTAGTCAATACCAGACCTTTATAATGGGTGTTTCCAGCAAGTGATTGATACTGGTTGCATGATCATGATGAATGTCTACATTTTGGAATATGCAGctgtgtattttgtgtgttagTTAACATTCATTGCAACtgtaaagtgtgtgtatgtgtgtgttgatcGTATCCAGCTGTAGGACAGTGTGTTTGTGAGTTAGTCCAGGGCCTCTCCCCATGGTCAAAAAGGAATGTAGGGTAGAATTGCCTCATCTACTCGGAAATATCAGCACTGCAGCGTCACTTAAGTGGCTTTCCCCAAACTCCTGAAATTCTTAAACCGAGCAGGCATGATGGCTTTCAGTTTTTTTCAAAGCCCTCAATGAAAAAAGGTGGTAAAAATGGCTGAAAATGTAAAAGAAGTGGACAAGTGCAGTGAGCGGCAGATTGAGAGCTTAATATGTAAGCAAGCATAACACCTTCCATTTTGTTCGTTGTCCTCAGCCTTTTCAGTTTTAGTTTGATCCGTATTCTTTATTTATGGCTTCATTAAATTACAATTATTTAGGCTTGTTTTATGTCATCAAATACAGTTCCTTGCATGCATTTCATTACTGAAGTAATATGTTATTGTATTTCTACCAAGTGAGCGTTTACTGTTTGTTTTGTCTGCCACAATTCAGTTGCAAATCCACAATCTAACAACATTCGTATATCTTGACACAGCCACAAATAATGTTCAGTTCTTGTGCTACTGCTATTATTCGGCACCCTCTTTTGTACCGTATGAAATGTGTTCATTTCCACAAACATGTTCTACGTTTGATCTCACTGCGCTTTGCTTCCTTATGATCTGTAATGCTGCAATGCATTCATAACTACACAATCTCCAAATTAGCATTAACGAGGACTTACAGCTTAGTATCCTGTTTATAGCAGTAATGTATGATTCTGCCACAGTAAGTCACAGAAGCCCATGCATTTTTCATTCACCACCAGGAAAATAAAGCAGTATATTCTTAACATCATCAATAAGAAGTTGAAACATAATTATCAATTAACCGATCTCTGTCATGTCCTTCATTGCTACAATTAATTTGCAATGAATCCTATTGCTATATAAAAATGATTGTATGACTCAAATTAGCTACAGTATAATCTATTCTTGGCTTTACACACATACGAATCACTGTACCATTCAAAGCCATTGTGTAGTCTATGTCTCTGAATTTGAAATGTATGAATGGACcgagttttttttttctcattttgaacTGCATGCAAAAATCAATTGTCTATTGCAGACTTTATTCTGCAATCATTGTTTAATCATATTCTTGAACAGAATATGGCAATTTgtatgttacattttttttattaaatgaTTCATGCTTTTG

Function

NR:

description
T-cell leukemia homeobox protein 1 isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09340 TLX1, HOX11; T-cell leukemia homeobox protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609364.2 False 3771 mRNA 0.39 3 68162832 68168638
XM_021609374.2 True 4054 mRNA 0.40 3 68162832 68168957

Neighbor

gene id symbol gene type direction distance location
sdhaf4 LOC106576700 coding downstream 808 68157900 ~ 68162024 (-)
LOC110527795 LOC106576701 coding downstream 10816 68142952 ~ 68152016 (-)
LOC110527775 LOC106576703 coding downstream 45143 68104128 ~ 68117689 (-)
LOC110527765 LOC100194528 coding downstream 76716 68078150 ~ 68086116 (-)
LOC110527734 LOC106576704 coding downstream 85027 67961768 ~ 68077805 (-)
lbx1a LOC105005765 coding upstream 47042 68215999 ~ 68218542 (-)
cyp17a1 cyp17a1 coding upstream 232625 68401582 ~ 68404726 (-)
nt5c2a nt5c2 coding upstream 240556 68409513 ~ 68433891 (-)
pcgf6 pcgf6 coding upstream 269116 68438073 ~ 68444855 (-)
LOC110527905 LOC106576688 coding upstream 279772 68448729 ~ 68460372 (-)
G75612 LOC106576702 non-coding downstream 20352 68138795 ~ 68142480 (-)
G75539 NA non-coding downstream 170804 67985167 ~ 67992028 (-)
LOC110532597 NA non-coding downstream 210115 67897706 ~ 67953556 (-)
G75426 NA non-coding downstream 411003 67751467 ~ 67751829 (-)
G75413 NA non-coding downstream 437032 67723624 ~ 67725800 (-)
G75664 NA non-coding upstream 36887 68205844 ~ 68206060 (-)
G75665 NA non-coding upstream 37859 68206816 ~ 68207132 (-)
G75764 NA non-coding upstream 63275 68232232 ~ 68285627 (-)
G75782 NA non-coding upstream 88648 68257605 ~ 68280269 (-)
G75846 NA non-coding upstream 201781 68370738 ~ 68370943 (-)
LOC110527687 sncg other downstream 481102 67669589 ~ 67681775 (-)
LOC110527584 LOC106576720 other downstream 774788 67386509 ~ 67389299 (-)
LOC110527436 ppp2r5d other downstream 1152245 66965664 ~ 67010646 (-)
tjap1 tjap1 other downstream 1340016 66806836 ~ 66883731 (-)
G75682 NA other upstream 41223 68210180 ~ 68211706 (-)
LOC110527951 coda1 other upstream 406636 68575379 ~ 68690343 (-)
LOC118965321 LOC106576963 other upstream 1913883 70082835 ~ 70088715 (-)
G78414 NA other upstream 2185959 70354916 ~ 70355591 (-)
G79616 NA other upstream 3152993 71321950 ~ 71386523 (-)

Expression


Co-expression Network