RNA id: XM_021609374.2


Basic Information

Item Value
RNA id XM_021609374.2
length 4054
RNA type mRNA
GC content 0.40
exon number 3
gene id tlx1
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 68162832 ~ 68168957 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTCCAGCCAATTGAGTCTCGAGGCCTAAAAATGGGGCTTAATCTCGTGCTGCCTATTTGGCATTTTGATTGATGCTCCACTCCAGTCGGCAAGGCTGCCCGAGCCAAAAGGGAAGACGAAAAAAACAGACAATCGCTTTTAGTATagcctcactctcacacacttacactctcacaaacacgcacacacacgcacacacacccacacacacacgtattagATAACGACTGGAGCGAGAGCTGAAGACGTTTTAAAGGACCAAGATAAGGCGCGCTGCGTGGAGCACCTCTGTACCTCGCGGGGGGCTCGCGGGGGCCATGGATCATATTGGAGCGCATCTCCAGCACATTCACGCGGAGCCCATCAGCTTCGGGATCGACCAAATCCTTAACAATGTGGACCAAAGCTGCATGCTCGGCGATCGGATGCCCGAGCCGGACTATGGCCTCGGCTGCGTCGTCAGCACCgcctacaacaccatgaccagtaACTTCACCGGCGACAACTCTGGATATAACGGTAACGCATGTGGGGTCGCCAATCTGAGCGGCACCTATAACATGAACATGGGGATGAACGTCAGTGGGAATAACGTTAACGCAGCTGGAGTCATCCGTGTGCCCGCGCACCGGCCTCTGAACAGTGGACACTCGTCCATCCCCTACGGCATGTCCACGATGCCAGGCTCGATTAACAACCTGACGGGATTTACATTCCCCTGGATGGAGAGTAACAGAAGATACACCAAAGACAGGTTCACCGGTCACCCGTACCAGAACCGGACGCCCCCCAAGAAGAAAAAGCCCCGGACGTCTTTTACACGCCTGCAGATCTGCGAGCTGGAGAAACGCTTTCACCGACAGAAGTACCTGGCTTCCGCAGAGCGAGCGGCTTTGGCCAAGGCCCTCAAGATGACTGACGCACAAGTCAAAACATGGTTCCAGAACAGAAGAACAAAATGGAGGCGGCAGACAGctgaggagagagaagcagagcgACAGCAGGCCAACCGGATCCTCATGCAACTCCAACAGGAGGCTTTTCAGAAAACGATAAACCAACCGGCAAACCCGGACCCGCTCTGCCTGCATAACAGCTCCCTGTTCGCGCTTCAGAACCTCCAGCCATGGACTGAGAACACCGCCAAAATCAGCAGCGTGTCCGCCTGCGAATAACAAACTCTGACCGCATTTATTTTCTCTTCTTTTTGAAAGTGAGTGGAGTCATAGCGAACAACTTTTTAAGATCATCAACTTGAAAAATATGACTCAAGAGGACCTGGATTTATCTGACTGCCTCAAAAAAGGTTTAGGTTGAAAGCATGGAGTGAACAAGGAGCTCATAGCCACCGGAAGTAGGGGTGTTGATAAATCATAATtaaatacacatatacatacatacacatacatatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaatcaacaATATATATAAATCACCAAATTAGTGCACTGGACCTTAATGACTCCTGTATGAGTGGAGAAAAATACTCGTTAATGCGGGGATATGTTTTCTTTCTCAGCACCCCCACCCGGAAAAATCTTCCTGCAGCCATGCACGAGTCCATTAGCAACATGCTTTTAGAGGACTGTGCAATAGTTCACCTTATCTTCCTGCTTTCAGGTGATAACATTTTTAGCAGTTGTATTAATTGTAATTTTTCAATCAAATATAGTCCAGTTCTAACTATGAACTAAGACTATAGCTAGATTCAAATAAGTGAGCACTTCTTTTAGCACTTTTCTCCTAGAGGAAAACTTTGACATATTCATTCATACCTGATCATTTGAGGAATAGGCCTAATTCAAGAAAAATGTATTGGTTTCAAAAATATGAATTTGCTGGTATAGATTCACTAGCCTGCCTGTGTCTCATAACAGTGATGTTTATATCAACCGTTTATATTGACAGCGATGGTTATGAATCGCTTTTAGCAGTTATGCAACCCCTTTACCTCTTTGCAAGGGAAGAATCAGTGGCAAAAGGTTCAAATGTACCACCTCATCAAGTTTCTGTTATAAATTATTCATGATCTTTGACCTCTTACCACATTACACAAGCACTTACTAATTTGGATTATACTTTATTGCACTCCACTATTTACCTGGTATTTGCAGAAATTGGGTTATACAGTTGCCTGATCATTATACAATATTATTTGTTGTCTTTGTCTTTCAAACAAGCACAATGTTAGCAATATGAACATGGCTTTGAATTTGTTGAAGTGTAAATGTATTGTTTTTTCGTTAAGTAGCCTATCCATTGTTACTGCATAATGTAATTTCTTAATAAATACCAGGTAAACAGCTGAATTATGACTGTAACATAAGGTGTTATTTGTTCAACTTTCTTGTACTCTATAATCCTATAATAATTTCAGTTATGTTGATCCATTTATACGTATAATGAAAGGCTAGAATTATAAGGccatatgaaatatattttaaaataattaATACAGTTGTACTTTGTGTATTTGTCATATTTTGTTTTAAACCAATGATCATGCTTCATGGAGTACATGGAGTGAACTACATTGCTGTGTATGGGACAACTGATGGCCAAAGCCCTCTTTGACTATAGGATCCATCCCTGATATACCTGCCCTCTATTAGTCAATACCAGACCTTTATAATGGGTGTTTCCAGCAAGTGATTGATACTGGTTGCATGATCATGATGAATGTCTACATTTTGGAATATGCAGctgtgtattttgtgtgttagTTAACATTCATTGCAACtgtaaagtgtgtgtatgtgtgtgttgatcGTATCCAGCTGTAGGACAGTGTGTTTGTGAGTTAGTCCAGGGCCTCTCCCCATGGTCAAAAAGGAATGTAGGGTAGAATTGCCTCATCTACTCGGAAATATCAGCACTGCAGCGTCACTTAAGTGGCTTTCCCCAAACTCCTGAAATTCTTAAACCGAGCAGGCATGATGGCTTTCAGTTTTTTTCAAAGCCCTCAATGAAAAAAGGTGGTAAAAATGGCTGAAAATGTAAAAGAAGTGGACAAGTGCAGTGAGCGGCAGATTGAGAGCTTAATATGTAAGCAAGCATAACACCTTCCATTTTGTTCGTTGTCCTCAGCCTTTTCAGTTTTAGTTTGATCCGTATTCTTTATTTATGGCTTCATTAAATTACAATTATTTAGGCTTGTTTTATGTCATCAAATACAGTTCCTTGCATGCATTTCATTACTGAAGTAATATGTTATTGTATTTCTACCAAGTGAGCGTTTACTGTTTGTTTTGTCTGCCACAATTCAGTTGCAAATCCACAATCTAACAACATTCGTATATCTTGACACAGCCACAAATAATGTTCAGTTCTTGTGCTACTGCTATTATTCGGCACCCTCTTTTGTACCGTATGAAATGTGTTCATTTCCACAAACATGTTCTACGTTTGATCTCACTGCGCTTTGCTTCCTTATGATCTGTAATGCTGCAATGCATTCATAACTACACAATCTCCAAATTAGCATTAACGAGGACTTACAGCTTAGTATCCTGTTTATAGCAGTAATGTATGATTCTGCCACAGTAAGTCACAGAAGCCCATGCATTTTTCATTCACCACCAGGAAAATAAAGCAGTATATTCTTAACATCATCAATAAGAAGTTGAAACATAATTATCAATTAACCGATCTCTGTCATGTCCTTCATTGCTACAATTAATTTGCAATGAATCCTATTGCTATATAAAAATGATTGTATGACTCAAATTAGCTACAGTATAATCTATTCTTGGCTTTACACACATACGAATCACTGTACCATTCAAAGCCATTGTGTAGTCTATGTCTCTGAATTTGAAATGTATGAATGGACcgagttttttttttctcattttgaacTGCATGCAAAAATCAATTGTCTATTGCAGACTTTATTCTGCAATCATTGTTTAATCATATTCTTGAACAGAATATGGCAATTTgtatgttacattttttttattaaatgaTTCATGCTTTTG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09340 TLX1, HOX11; T-cell leukemia homeobox protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83578 lncRNA downstream 20352 68138795 ~ 68142480 (-) True G75612
TU83499 lncRNA downstream 170804 67985167 ~ 67992028 (-) True G75539
TU83444 lncRNA downstream 210115 67897706 ~ 67952717 (-) True LOC110532597
TU83367 lncRNA downstream 411003 67751467 ~ 67751829 (-) True G75426
TU83354 lncRNA downstream 437032 67723624 ~ 67725800 (-) True G75413
TU83635 lncRNA upstream 36887 68205844 ~ 68206060 (-) True G75664
TU83636 lncRNA upstream 37859 68206816 ~ 68207132 (-) True G75665
TU83746 lncRNA upstream 63275 68232232 ~ 68285627 (-) True G75764
TU83765 lncRNA upstream 88648 68257605 ~ 68280269 (-) True G75782
TU83845 lncRNA upstream 201781 68370738 ~ 68370943 (-) True G75846
XM_021609351.2 mRNA downstream 808 68157900 ~ 68162024 (-) False sdhaf4
XM_021609322.2 mRNA downstream 10816 68142952 ~ 68152016 (-) True LOC110527795
XM_021609315.2 mRNA downstream 10869 68142952 ~ 68151963 (-) False LOC110527795
XM_021609340.2 mRNA downstream 10869 68142952 ~ 68151963 (-) False LOC110527795
XM_036983531.1 mRNA downstream 11697 68142952 ~ 68151135 (-) False LOC110527795
XM_021609385.2 mRNA upstream 47042 68215999 ~ 68218542 (-) True lbx1a
NM_001124747.1 mRNA upstream 232625 68401582 ~ 68404726 (-) True cyp17a1
XM_021609455.2 mRNA upstream 240556 68409513 ~ 68433891 (-) False nt5c2a
XM_021609462.2 mRNA upstream 240556 68409513 ~ 68433891 (-) False nt5c2a
XM_036983613.1 mRNA upstream 240556 68409513 ~ 68433891 (-) True nt5c2a
TU83574 other downstream 830 68157961 ~ 68162002 (-) True sdhaf4
TU83338 other downstream 481102 67669589 ~ 67681730 (-) False LOC110527687
TU83339 other downstream 481102 67669589 ~ 67681730 (-) True LOC110527687
TU83185 other downstream 774788 67386509 ~ 67388044 (-) True LOC110527584
TU82368 other downstream 1152245 66994682 ~ 67010587 (-) True LOC110527436
TU83653 other upstream 41223 68210180 ~ 68211706 (-) True G75682
TU84158 other upstream 406636 68575593 ~ 68577744 (-) False LOC110527951
TU84152 other upstream 470419 68639376 ~ 68690229 (-) True LOC110527951
TU86507 other upstream 1913883 70082840 ~ 70085385 (-) False LOC118965321
TU86508 other upstream 1913883 70082840 ~ 70085385 (-) False LOC118965321

Expression Profile