RNA id: XM_021609462.2


Basic Information

Item Value
RNA id XM_021609462.2
length 4885
RNA type mRNA
GC content 0.45
exon number 19
gene id nt5c2a
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 68409513 ~ 68433891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGTTCCAGTAGGCCTATTATTATAACATCTGTATATGGACTGTTCATTCTATGTATTACATTTCTATCTACATATTCTGAACCAGGCTTTGCGCATGCTCTGTGAATCATTATCTACCCACTCAATATTGCAACAAGACTGAAATAATTCAAACGGTTCAAGATGACGTCATGGAGCGACCGCTTACAGAACTTTGCAGACCTCCCAGCCAACATGGACGGCTTGGCCATGAAGAAGTATCGGCGTGAGGCCTACCACAGAGTTTTTGTGAACAGAAGCTTGGCAATGGAGAAGATTAAGTGCTTTGGTTTTGATATGGACTACACTCTGGCAGTGTATAAATCACCTGAGTACGAGTCGCTGGGATTTGACCTGACCGTGGAACGTCTCGTCCACATCGGTTACCCACAGGAGCTGCTCAACTTTGTCTATGACCCCGCTTTCCCCACCAGAGGCCTGTTGTTTGACACAATGCACGGGAATCTGCTCAAGGTTGACGCATACGGCAACATCCTGGTCTGTGCCCACGGCTTCAACTTCATGAGGGGGCCTGAGATCAGGGAGATGTACCCCAACAAGTTTATCCAGCGTGGAGACACTGACCGCTTCTACATTCTGAACACACTGTTCAACCTCCCAGAAACCTACCTCTTTGCTTGTCTGGTTGATTTCTTCACCAACTGCCCCAAATACACAAGCTGCGAGACTGGCTTTAAGAATGGAGACCTCTTCATGTCCTACAAGAGCATGTTCCAGGATGTCCGTGATGCTGTGGACTGGGTCCACTTGAAGGGATCTTTGAAAGAAAAAACGGTTGAAAACCTGGAAAAGTATGTGGTCAAGGATGGGAAGCTCCCTCTACTCCTGAGTCGGATGAATGAAGTGGCCAAGGTGTTCCTGGCCACCAACAGTGACTACAAATACACAGAGAAAATAATGACATACCTGTTTGACTTCCCCCATGGTCCAAAGGTGGGAATGCCCCATCGGCCCTGGCAGTCCTACTTTGACCTGATCTTAGTAGATGCCCGCAAACCCGTGTTCTTCGGAGAGGGGACAGTGCTACGGCAGGTCGacacaACCACAGGCCGGCTGAAGATTGGCACATACACAGGACCGCTGCAGCACGGCATCGTGTACTCTGGAGGTTCCTCTGACATAGTGTGTGACCTGCTGGGGGCCAAAGGGAAGGACATAGTATACATTGGGGACCACATCTTTGGGGACATCCTCAAGTCCAAAAAACGCCAGGGATGGAGGACCTTCTTGGTGATCCCTGAACTCGCTCAGGAGCTGCACGTGTGGACTGACAAGAGCTCTCTGTTTGAGGAGCTCCAGTCTCTAGACATCTTCCTGGCAGAGCTCTATAAaAATCTTGACAGCAGCAGCAACGAGAGACCTGATATCAGTTCCCTCCAGCGCAGgatcaagAAAGTGACCCATGACATGGACATGTGCTATGGGATGATGGGCAGTCTGTTCCGCAGTGGCTCCAGACAGACTCTGTTTGCGTCACAGGTGATGCGCTATGCTGACCTGTACGCTGCCTCCTTCATCAACCTCCTCTACTACCCATTCAGCTACCTGTTCAGAGCAGCACACGTACTGATGCCCCATGAGTCGACGGTTGAGCACGCCCACGTGGACATCAACGATACCGAGTCGCCCCTGGCAACGCGTAACCGCCACTCCGTGGACCTGTTGGAGTTAGACTGTAAGAGGCACCAGCTGACCCGCTCCATAAGTGAGATCCAGCCCCCAAACCTGTTCCCACAGACCCCCCAGGAGATCACCCACTGCCACGAcgaggatgatgatgaggaagaggaagaggaggaagaTTTCCAGAGAAGTTTCCAGATGGAGCTCTTCGGACCACACCTAAGAGACTGATGGTGACTTGGCCCCCCTAGCATGCCTGCACTGACCTGGCATCATTATGCAGTCAGTATCACATACTTGAGCTGTGCACGCATAGTCTTGAAAACACCACCCTAGGCAACACAGTGACCAGGGTCTGGTTTCAATGGTGGACTCTTTTGGCATAGAGCAGGGATGGGCCACATTGATTGGTGTGGGGGCCACTTTGATTGGTGTGGGGGCCACATGAGGCGAGGTTGCTAGCAGGTCTGCATATCCACATGTGCATAGCCCTTTTCCCACCACATtgcaagcaaaacatttttgcagcccCCCTCTTGACACCAAAGAGTTCATTttgtgcaattctacacattttgtcatggggcgtagagaaaatgttgcagttttaaagcaagtttgctgcaattctatacattttgccggGGAGGTAAATTGATCCAAAGGACTTCAAAAGGGAGCGGCCCGCCAATTGCCAATCCCTGGCATAGAGGAGCTACATCACGGCCTATGTCGATAAGGGAGGGAAAAATCTGGGGCTTTCCCAACAAATCACGCAGCAGACATGCCGGAATGTCACGATTCAAAACCAAGGTTTGCAGGCAAAAACTCTGCAGTGCTTTTAGTTAAGGTTGCAAACGGGCCACGTGAAATTCACTCATTTAAAAATAACCTCTATGATCTTCATCTTGCTAGCtactattttgtattttattcaagTTGATAAAGCTGTGACGTAGGCATTGATGTCGTTCCTCTATGCCAAAAGAGTCCATAATTGAAACGAGGCCCAAGCCTAGGGTCGGGTTTTCCAGACTAATGCACTTACGCTGCCCTGCTACTGTCCCCCAGCTGTGAGTGGTGTGCCTTTTAATTTGTTTTCCTGAATGAAACTGTTCCCTtggttaaagatgcactatgcagaaatcgctctgccatttcctggttgctcaaATTCGAATAGTTTGCCTAATGTATATGTGACGAAACGAGCAAgtttagtgtagagaatcattgtaccatgtAAACCGCAGTGagatatattttccataaccaaaaatagtatattcagctgtttgaagctggtataCAAAACACAAGTAAAAGACGCAAGCGAAACTTCAGCACGGTAAGCATAGAAATAgggcacatagaacagatctaccgcttcttagacttgctttcaataagaaatgacagatctataactcacatttctatgtgaatttggttggggtcgcccaaaaagttacatattgccgcTTTAATGTTTGAACCACCTAAGGAACAATAGTATAATTTGTATGGAGTCCTATTTGCACCAGACTTTGTGGTTATAGAAATGCTTTTCTCTGAACTGTTATAGAATAGTATTTTTATGGAAACAGAGCATGTGATGGCTGCTGTGGAACAGTATAAAAGTTTGTGATCATACGCACATTCTTAAAAAACGTAGGTGCTGGGCTAATAAAGAATACTTGTGAAGAACAGGAAGGCCTGTTTACGCTCCCAAAAAAGCGCTGAATTGGGTGCATAAACTGTGTGTGGGCCTTCCTGTTCTTTGCTGTGGTACAGTACACATCTGTCTGaggaatgtgacaaataaaagtaTCACGTTACGTGACGTTACACAGCAGCTGCAGATCCAGAGCAGGCGGCAGAAGCCGCAATTCTCCTTTTGGCATCTGGTTACCTGCTCTAGTTACCAGATTCCTCCTACTAATTTTACCATCCCCCACTGACTAatagactacatttcccagaatTCAGTTGTATTCCATAGCTCAGCCAATCAGAGTCCCTGTCTCTACTTAGTGCCCTACACATTATACAGATTATGGCAATAGTATACCCTGTATTATCATTTTAATTCAGACCATTTCTGTATCAAGAAATACTGTGTATATCAGCCCTATGAAACTGTTATTGCCTTAGTCTGGTCTGGATTTGTGAGACAATGTATATACAAGATAAGTATATTTTTGTGTGTCTTTTGAATAATGTTTGAAAGGGAAGACAGTCCTGGTAAAAGCTGCTTGTGATATTTACTGTAAAAGTGTTCTGAAGGGCTTTGATGTTGTAGGCCTCTTCTATGCGCATTTCAAATGGCTGTAGTTCAATGACATTGCCTAAGTTCACAGCATGCTCCCGGAGTATATAACCAGAGACATGCTTAAAACTCATCAAATTGCAGGCATTTTGTTGAAAGCCTGAAAAACATGGTATTGAAATGCATCTGCGTTTCCGCAGAAAACAGGCTTAACAACTGTAAGTATTCAGCTGcatgaatatttttttatataagaGGTGAAATTCTGCACTGCAAGAATCATTTTCTTATTTCTGCAATAGTATAGGCTAACCGAGTGTCTCTGGGTGTACGGTTATGTATGAGTGTTTATGGTTTATTATGGTGCGTAGCATGACCCATAAACTGGTCCAAGTTGCCCTCACGTTTATTTCTAACCCCTCCCCCTAATGTGGGTCAAAGATCTTACTATGCCCGTAAGCTATGTGCTCATATGATtggctgtttgtttgttttaattgCTGTTACTGTACAGTCTTGTCCTACTGTATGGAACTGGATTGACTCCCTCTACTGGAAGTTTGAAAACTACCATTAACTCAAATGTTTCAATTCAGAAGTCCCTTTACCTTGTGGCGGATTTACCTACTGTATAAAAGCAACGCTAACTGTGCCAATGAATgtcatgttatttttttttaaatatgttttccaAATTTGTAAGATTTATAGTTTTTGTGCATGATCTGAATCTGTTGAGTTTGGAGCTGCTTTTTGAATTCACTATGGAATGTGAGACGACTTACAAAAGTAAACTGTGCCAATGGATTTAAAGCAATTtatgaaaatgtattttcttgAAAACATTTTGTGCATGTTCTGCAGTTGCTGTTTAAGTGTGGAATTTGTTTCTGAGAATTTTACTTGGAGGAATATCCATTTTGATGTTAAATAAACATGTAATGCGCCGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83854 lncRNA downstream 29330 68379943 ~ 68380183 (-) True G75854
TU83852 lncRNA downstream 31758 68377255 ~ 68377755 (-) True G75852
TU83847 lncRNA downstream 36610 68372442 ~ 68372903 (-) True G75848
TU83845 lncRNA downstream 38570 68370738 ~ 68370943 (-) True G75846
TU83765 lncRNA downstream 129244 68257605 ~ 68280269 (-) True G75782
TU83921 lncRNA upstream 1674 68435565 ~ 68437455 (-) True G75916
TU84165 lncRNA upstream 119326 68553217 ~ 68553432 (-) True G76134
TU84161 lncRNA upstream 135043 68568934 ~ 68569199 (-) True LOC110527939
TU84162 lncRNA upstream 144941 68578832 ~ 68579190 (-) False LOC110527951
TU84392 lncRNA upstream 267203 68701094 ~ 68701345 (-) True G76341
NM_001124747.1 mRNA downstream 4787 68401582 ~ 68404726 (-) True cyp17a1
XM_021609385.2 mRNA downstream 190971 68215999 ~ 68218542 (-) True lbx1a
XM_021609374.2 mRNA downstream 240556 68162832 ~ 68168957 (-) True tlx1
XM_021609364.2 mRNA downstream 240875 68162832 ~ 68168638 (-) False tlx1
XM_021609351.2 mRNA downstream 247489 68157900 ~ 68162024 (-) False sdhaf4
XM_021609486.2 mRNA upstream 4182 68438073 ~ 68444855 (-) True pcgf6
XM_021609511.2 mRNA upstream 14838 68448729 ~ 68460365 (-) False LOC110527905
XM_036983661.1 mRNA upstream 14838 68448729 ~ 68460368 (-) False LOC110527905
XM_021609517.2 mRNA upstream 14838 68448729 ~ 68460372 (-) True LOC110527905
XM_021609499.2 mRNA upstream 26209 68460100 ~ 68463774 (-) True calhm2.1
TU83653 other downstream 197807 68210180 ~ 68211706 (-) True G75682
TU83574 other downstream 247511 68157961 ~ 68162002 (-) True sdhaf4
TU83338 other downstream 727783 67669589 ~ 67681730 (-) False LOC110527687
TU83339 other downstream 727783 67669589 ~ 67681730 (-) True LOC110527687
TU83185 other downstream 1021469 67386509 ~ 67388044 (-) True LOC110527584
TU84158 other upstream 141702 68575593 ~ 68577744 (-) False LOC110527951
TU84152 other upstream 205485 68639376 ~ 68690229 (-) True LOC110527951
TU86507 other upstream 1648949 70082840 ~ 70085385 (-) False LOC118965321
TU86508 other upstream 1648949 70082840 ~ 70085385 (-) False LOC118965321
TU86509 other upstream 1648949 70082840 ~ 70085009 (-) False LOC118965321

Expression Profile