G75612 (LOC106576702)


Basic Information

Item Value
gene id G75612
gene name LOC106576702
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 68138795 ~ 68142480 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU83578
TGGGAACAGATTTATTTTAAAACTGTATTTAGTTGCCATAATTATGAAAAAAAGAACAGTTTTATATATGCAATTCTGAATGAAGATATTCCACAGGTAATGGCCCATTTGCAAACCAATCCTAAATTACTGGTGCAATTTATTTGCCATGAATGTAgaataaataattaaaacaaaatgtTTCTACATATTCCACCAAGAATCGCAGACAGATCTTTCTGTATCATACAGTCTGGAAGTACAATATTTATTgtttaaatctgacatgttgaGCAACAAAATTACAATTGCCTACAGCCACAAATTTAATTCAGAAATTAAGTCAAGACTACTCAGATAATGTAATGAAGTCTACAGAACTAGCAAATCAGatcatacatatatacataagcatatatacagtaccattcaaaagtttggacacctcattcaagggtttttattttttactattgtctatattgtagaattaaatcatgtagtaaccatgatttagactcttcaaagtagccaccctttgccttgacatcttggcattctctcaaccatcttgaaggagttcccacatatgctgagcactgtcatttctctttgtttatttgagctgttcttgacatatgGACttagtattttaccaaatagggctatcaactgtataccagccctaccctgtcacaacaactgatttggtcaaacgcattaaggaaagaaattccacaaatgaatgcacatctgttaattgaaatgcattcctggtgactacctcatgaatctggttgagagaataccaacattgtgcaaagctgtcaccaaggcaaagggtggctactttgaagaatataaaatatattttgatttgtttaacacttttttggttactacatgattccatgtgttatttcatagttttgatgtccactattattctacaatgtagaaaatagtccaaatgaaaacccttgattgagtaggtgtccaaacgctTGACTGGTACTGGTATATTTTTCAGTTCTTTTTCACgagacagtgagagacttgtGCAGTTGGCTGACACTCATATTCGCGAATAAACACCTTAGAGAGACATGCCGACACAAACAGTAAAATAACCAACAGGAAAGGAAATcgaagaaaaagaaaaaagacGGGGACAGAAGAATAGAAAACATAATTAAATTTGACCACAGACCAATCCCGACGTAGAAATGCAgtgagatacacacacattattctCATAACCCTGCACACAGAGGGGGGCGTTTTATCTGCGGGGGTGAGGGGGCAAACAAAATCAGTTGTCTCTGAGGTGGTCCGGGGAAGGGTGGGGGCCAGTGAGGGACATGTCCATCTGACTGCTAACAGATTGCCTAGAAAGTACTACTAATCATCAATTACCAGGGCAATAAGGGAGGGGGGATAATGATTTATTTTCTTGGTAGTGCAGCTACAGTACAAATTCAGGCAACTTCATTTTGTTTTccctctcgcacacacacacaacttcttTCTATCAGACTTTCCCTCTCTCGGTTACGGTTAGGCTAGGAAGgtgggggtagaggtgttGGTGGGGTTCTCTCTCAGCAGCAGCCCCCCGAGGCAGGTTTGACAGGCGTACTCTGGATCTTGACATTGGACTTCTCGTTGCCTCCGGTCGTGGCCCCGGGCCCCATCCTCTTCTTGATCTCAGCAGCCATGGTCATGAAGGCCTGCTCCACATTGGTGGCGCTCTTGGCACTCGTTTCCAAGAAGGGGATGCCCAGGGAGTCTGCAAACTCCTTTGCTGTTGTGTAATCCACCACTTTCTTTGTGGTCAGGTCACACTTGTTCCCCACCAATAGCTTGTTGACATTTTCACTGGCATAGCGGTCGATTTCCTGTAGCCACTGCTTGACATTGTTGAAGGACTCctggtcTGTGACGTCGTAGACTACGATAATGCCGTGGGCTCCTCTATAGTAGCTGGATGTGATTGTGCGAAACCTCTCCTGCCCCGCCGTGTCCCACTGTCAGCGTCAATACACAGCAGAGATATTCAGTCAGTCATAAATACAGGACTGCCAAACACACTGCCAAATAGATGCTGCCACACAAATACAAGGTATCTGCAGGTTTCATCAAGTTGAATTGAAGACATTTTAAAGACCTTTTTAGTGCAACTTGAAATGCAATTTAATAACAATTTGAGGTCTTCGTGCGCCACACACCTGCTAATTTCCCCATATTTTTAATGGCATTCACAGTGCTTTAATAAAGTAGTGCAATAGACTACTGAGATGGTATTCAAATATCTTGTTTAATCTAAGCAGGAATGCATGATCCAAGATATTTTGATGTGCACTGTAACCTAATCCAGTTACTGCCATGAATTTGA

Function

NR:

description
PREDICTED: ras-related protein ORAB-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83578 True 2374 lncRNA 0.41 7 68138795 68142480

Neighbor

gene id symbol gene type direction distance location
LOC110527775 LOC106576703 coding downstream 21106 68104128 ~ 68117689 (-)
LOC110527765 LOC100194528 coding downstream 52679 68078150 ~ 68086116 (-)
LOC110527734 LOC106576704 coding downstream 60990 67961768 ~ 68077805 (-)
LOC110532597 NA coding downstream 185239 67897706 ~ 67953556 (-)
LOC110532592 opn4 coding downstream 238822 67872959 ~ 67899973 (-)
LOC110527795 LOC106576701 coding upstream 472 68142952 ~ 68152016 (-)
sdhaf4 LOC106576700 coding upstream 15420 68157900 ~ 68162024 (-)
tlx1 LOC106576912 coding upstream 20352 68162832 ~ 68168957 (-)
lbx1a LOC105005765 coding upstream 73519 68215999 ~ 68218542 (-)
cyp17a1 cyp17a1 coding upstream 259102 68401582 ~ 68404726 (-)
G75539 NA non-coding downstream 146767 67985167 ~ 67992028 (-)
G75426 NA non-coding downstream 386966 67751467 ~ 67751829 (-)
G75413 NA non-coding downstream 412995 67723624 ~ 67725800 (-)
G75385 NA non-coding downstream 494831 67643690 ~ 67643964 (-)
G75664 NA non-coding upstream 63364 68205844 ~ 68206060 (-)
G75665 NA non-coding upstream 64336 68206816 ~ 68207132 (-)
G75764 NA non-coding upstream 89752 68232232 ~ 68285627 (-)
G75782 NA non-coding upstream 115125 68257605 ~ 68280269 (-)
G75846 NA non-coding upstream 228258 68370738 ~ 68370943 (-)
LOC110527687 sncg other downstream 457065 67669589 ~ 67681775 (-)
LOC110527584 LOC106576720 other downstream 750751 67386509 ~ 67389299 (-)
LOC110527436 ppp2r5d other downstream 1128208 66965664 ~ 67010646 (-)
tjap1 tjap1 other downstream 1315979 66806836 ~ 66883731 (-)
LOC110526867 LOC100136521 other downstream 3757439 64369803 ~ 64384521 (-)
G75682 NA other upstream 67700 68210180 ~ 68211706 (-)
LOC110527951 coda1 other upstream 433113 68575379 ~ 68690343 (-)
LOC118965321 LOC106576963 other upstream 1940360 70082835 ~ 70088715 (-)
G78414 NA other upstream 2212436 70354916 ~ 70355591 (-)

Expression


Co-expression Network