G22960 (LOC106573628)


Basic Information

Item Value
gene id G22960
gene name LOC106573628
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 23335682 ~ 23336241 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU26558
AAAGCAAAAACACTGAGGTTGACGCCGAAAGACATCTTTAGGTTAGCTTGATTATGAAGGTACTTACAAATATATGAATAATATGGAACAAATATTTTATTATGCAACATACATACTGTAGGTGCTTACCCGGTAGTAATCCGTGCTGTAGATGTCCCTGGACATTCCAAAGTCACCAATCTTAACCAGCAGGCCGTTGCCCACCAGGCAGTTCCGAGTGGCTAAGTCACGGTGCACAAAGTGCTGGGAGGCCAGGTACATCATCCCTGCGGCAATCTGAGTGGCAATGTGCAGCATCTGAGACAAGCCCAGCTCCCCATTGGTCTGCAGCGACTGTCCGTCAACCAGGATCAACGCATCAGGCCCATGAGCTCTGTGGATGGAGaaataagggagggagggagggagaatcttatctcaatcaccatattcttactCCACATTACATTTTATAATGGATTTTAGCCCAGCATAGTATATGACAGTGGTATGTTCTTCAGTTGTAATAGATTGGACATGAGATTCATGGTGTTTTACATTCAAACTTTAATTGAGACAGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26558 True 560 lncRNA 0.52 1 23335682 23336241

Neighbor

gene id symbol gene type direction distance location
LOC110510174 LOC106573623 coding upstream 466303 22713674 ~ 22869379 (+)
LOC110513869 LOC106560949 coding upstream 712240 22620666 ~ 22623478 (+)
zgc:110339 LOC106573615 coding upstream 900532 22432310 ~ 22435150 (+)
LOC110532091 LOC106573613 coding upstream 913400 22281089 ~ 22422282 (+)
LOC110508905 twf1 coding upstream 1109578 22212332 ~ 22226104 (+)
LOC110511054 NA coding downstream 451252 23787493 ~ 23793379 (+)
LOC110511247 LOC106573632 coding downstream 468773 23805014 ~ 23822354 (+)
LOC110511358 LOC106573633 coding downstream 536673 23872914 ~ 23905175 (+)
LOC110512398 LOC106573641 coding downstream 749428 24085669 ~ 24091336 (+)
LOC110512529 LOC106573640 coding downstream 769105 24105346 ~ 24114557 (+)
G22957 NA non-coding upstream 3285 23331887 ~ 23332397 (+)
G22952 NA non-coding upstream 17227 23317930 ~ 23318455 (+)
G22951 NA non-coding upstream 21721 23312428 ~ 23313961 (+)
G22949 NA non-coding upstream 24787 23310357 ~ 23310895 (+)
G22948 NA non-coding upstream 25395 23309969 ~ 23310287 (+)
G22983 NA non-coding downstream 27518 23363759 ~ 23363993 (+)
G23042 LOC106573628 non-coding downstream 105902 23442143 ~ 23442474 (+)
G23048 NA non-coding downstream 115093 23451334 ~ 23528226 (+)
G23106 NA non-coding downstream 197438 23533679 ~ 23533935 (+)
G23110 NA non-coding downstream 204462 23540703 ~ 23540986 (+)
G20773 NA other upstream 1767494 21567545 ~ 21568188 (+)
G19400 NA other upstream 3025784 20309425 ~ 20309898 (+)
G19380 LOC100194703 other upstream 3058787 20276590 ~ 20276895 (+)
G19359 NA other upstream 3092807 20242645 ~ 20242875 (+)
G19083 NA other upstream 3419850 19915586 ~ 19915832 (+)
G23109 NA other downstream 202155 23538396 ~ 23538863 (+)
G23135 NA other downstream 238351 23574592 ~ 23574995 (+)
ccl4 ccl4 other downstream 1168414 24504638 ~ 24506125 (+)
G24123 NA other downstream 1214284 24550525 ~ 24552435 (+)

Expression


Co-expression Network