G51914


Basic Information

Item Value
gene id G51914
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 47826968 ~ 47830052 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU58008
GTGGTGGACAATCGACGGACATAGAAAATGATAACTGCGTGAGGAGATGCGGTAGCTGTGGCCTGTATGAGGTGCGAGCGAGTAAGGCGTCAGTGTGAACTGAAGTCATTGACCCTTCACAGCCCGACACCACCTGTCACTGCGGCGTTCGCTCACCGATCTGATGTTGACGTCCACGCCGGTGCGAGCCATCATGTCCACAGCCTCCACGCAGCCTTGCTTGGTTGCCCAGTGAAGCGCCGTAACCTGTGTATCCCTTTGTATTATGTCCGGATTCCATCCCTGTTCTGCCTTTCTCCAGAGCAGCTATTCTTATTGTCCGCGTGGACGTATTGATGTAGAGCCGGGACGCTAGCTATTCCCCTCCGTCCACATTCCCAGTCGAAGCACATCAAagtagagagaggtgagaggagaggcatGCTTTGATGGGTTCACTCTCTGACATGTCCATTCATTGACACCTTTGGTCCTATTCTGttcagatttggcatgggttcaaACTAAACCCTTCAATCAACAAGAGTTCCCCGTAATCTTCCTTTTAAGATTAAGATAGTCCCCATAGAGAATGCAGGGAACTATAGTAACAGTAATCTTCTTGTCCTTCTGAACTGATTCTTTGTATCTTGTAACACTGAgatggttaaaactctttccacccCATCCCTTTCATAAGGACACACAGCATCAACCCTGGCCTTTCCACCCCATCCCTTTCATAAGGACACACAGCATCAACCCTGGCCTTTCCTACCCCGTCCCGCTCCCTACCAACCTCACACTGTCACTACACTGTCACTACCATGTTGCGGTACAGTAGATTAGATGAAACAAATAGAACAGTGTTTCCCACTGGTTTCCAAGCGTTTAATTATCTCTCGCCAATATATATCATTCAGCCAACAACCGAGAGCGCGGAAATCTAGCAGAAACCAATggctgggaggaggggggggggggaatgtctGTCTGCGGGATAGCTAACGGGAGTTATTTTTGGGTGCCTGCAGCAGCCccctttaagtgtgtgtgtggggagcgcatgcatgcgtgtgtgtgtgtgtgttaatgtagaCTGACCACTGCGCGCGTCGAGGCGGGATGCTGCCAAGCTGCTTTACCCAGGCCTGGTTTCATTACAAGGTGCTAACCGAGCTCTGTGATGCCTGTTGGGGTTCTTCCGTCACTCCGTCAGACTGTTTGGCCTCCCCAACGCTCCAGACACAAACTGATTAAAAAAAACGCTTCTCCATCCAGGTCTGGAGCTACTGTCACTCTCCATGTTATGATGAGCAACTGTGACCAGTATGACTGTCCACTTTACATcaacgatttaaaaaaaataataaaaaatgaaataaatgttttgcGGTTACACTTATAGGATTAGTAATGATGCACATAGTTGCTGAATACAATACAATCGAACAGTATCATATTGTGTTTAAACCAGTACCTACTGTTTACAAAATGTCCCATGTTAGTTAGCATTATGGCACACCATAAATTGCATTAGATTTACTGTGGCCGTAAGGTACAACCTTTCTTTAAAACAGGGTGTTTTAAATCCGGCccatgaatagagagagaagcCTTCTGGGAGGTATCTGCCATGCATCATGGGACAGTTTGACAACAGTGACCCTGTTCAAACTGGTAACTGCCATCCGACCGTCTGCTACCATCAGATTGGCATCTGTGGCCCTTTAGTGGGTGGTATTCTGGTACAGGGACGAACAACAAAACCAGTTCCCAATGCCTCGCTGAAAGCAGCAGGAAAAAGAACATCAAAAAGGCGTAAATTCCACTTCTTCCATTTTGATCAAGTGAAGCATAAAAAGAAATGTAATAATCTCAAGTGGCAAGGGTTTACACCATTGATGTTGTTACTTCTGCATGGTGGGGCCCATGGAGCTGATATCGGGGGGGGCTATACAAACTGACTGAAGGAGGGAGAGTTGTAGGAGAGGCCATATGGACGAGGTCTTTTGCTTTGGAGCCTTTCAATAGACAGCTTAGCGCTTGTTTATGCAGTCTCACTCAACGCTGTGTGAAATTCCTGCTCTGGCTTCAGCAGTTGCCTTTCAAAGCCGGACTGTGGCAATAGGCTACCATATGCTCTGCTGGTTGAAACATTCTCAACAGACATACCTCAACAAAGTTTTC

Function

NR:

description
PREDICTED: uncharacterized protein LOC107679978 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58008 True 2169 lncRNA 0.47 2 47826968 47830052

Neighbor

gene id symbol gene type direction distance location
LOC110524174 LOC106573254 coding downstream 38675 47785638 ~ 47788293 (-)
LOC110532355 faap24 coding downstream 93429 47725613 ~ 47733539 (-)
LOC110524148 LOC106573251 coding downstream 104568 47695182 ~ 47722400 (-)
LOC110524125 LOC106573250 coding downstream 137902 47633880 ~ 47689066 (-)
LOC118964710 NA coding downstream 222688 47596704 ~ 47604280 (-)
LOC110524205 LOC106573257 coding upstream 213440 48043492 ~ 48049196 (-)
LOC110524212 LOC106573258 coding upstream 241777 48071829 ~ 48123356 (-)
LOC110524242 NA coding upstream 389388 48219440 ~ 48247048 (-)
LOC110524264 LOC106573263 coding upstream 461574 48291626 ~ 48304829 (-)
LOC110524273 LOC106573264 coding upstream 483613 48313665 ~ 48396381 (-)
G51899 LOC106573253 non-coding downstream 20068 47806554 ~ 47806900 (-)
G51802 NA non-coding downstream 136198 47689120 ~ 47690770 (-)
G51652 NA non-coding downstream 442480 47383658 ~ 47384488 (-)
G51277 NA non-coding downstream 550620 47275397 ~ 47276348 (-)
G51261 NA non-coding downstream 572213 47253034 ~ 47254755 (-)
G51977 NA non-coding upstream 61426 47891478 ~ 47891884 (-)
G51993 NA non-coding upstream 71177 47901229 ~ 47901581 (-)
G52017 NA non-coding upstream 84896 47914948 ~ 47915246 (-)
G52033 NA non-coding upstream 95282 47925334 ~ 47925952 (-)
G52630 rpgrip1l non-coding upstream 135339 47965391 ~ 47965788 (-)
LOC110524104 LOC106573248 other downstream 265759 47541224 ~ 47561223 (-)
G51649 LOC106573246 other downstream 448425 47377641 ~ 47378543 (-)
G51285 LOC106561952 other downstream 537287 47288939 ~ 47289681 (-)
G51214 NA other downstream 707935 47064774 ~ 47236625 (-)
G49962 NA other downstream 1877017 45948958 ~ 45949951 (-)
LOC110532382 LOC106573120 other upstream 1154133 48971580 ~ 49044257 (-)
G55408 NA other upstream 2581582 50411634 ~ 50412128 (-)
G55627 NA other upstream 2935311 50765363 ~ 50767431 (-)
LOC110524514 borcs5 other upstream 2947695 50777716 ~ 50792069 (-)

Expression


Co-expression Network