XLOC_020173 (CR450686.1)


Basic Information

Item Value
gene id XLOC_020173
gene name CR450686.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 8612462 ~ 8748801 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040133
ATGTCCCAATGTTCTCCAGGTGTGTTTGGTGCGAAGACAAATGAAATTAAACTGGTGTTGGAGGGAGATACGGTAACATTACCGGCTGAGGTACACGGAGATGAGCTGCTAATTTGGAGGTTTGGACCGGACGGGACAATGATTGCAAAGTTTAGTAAGAAAAACGGAGAATACGTCATAATGCCTGTCGAGAGATTCAGCAGCAGACTGATGCCGGAGTACGAAACTGGATCTCTGATTATCAGAAACATCAGAACTGAGCACGCTGGGCTTTATCAGCTACAGACCATCAGTTCCACAGTCTCAACGAAGACATTCACTGTTTCTGTCTATGCTCGTCCACCCATTCCTGTCATTACCAGAGACTATTCGCTATGTTCTTCATCAACATCTTCCCCATCACCCTCAGCACCATTCCAGTGTTCACTAgtgtgttcagtggtgaatgtgagcgctgtgagtctctcctggtacaaaggaaacagtgtattgtCCAACATCAGTGTGTCTGACCTCAGCAGCAGCGTATCTTTACCTCTGGAGGTGGAATATCAGGATAAaaacacctacagctgtgtgaTCAACAATCCCGTCAGCAACCAGACCACAAATCTGGACATCGACATACTCTGTCAACCTTGTCCAGCTCCTCTGCCAATTCCCGTCATCAACACCACAGATTCTCCACAATGTCCTTCGTCTGCATCACTCCAGCAGTGTTCACTAGTGTGTTCAGTGGTGAACGTGAGtgctgtgagtctctcctggtacaaaggaaacagtgtattgtccagcatcagcgcgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggataaaaacacctacagctgtgtgGTCAACAACACTATAATGAACCTTACTCGACGTCTGGACATGGACACACTCTGTCAGTCATGTTCAGGTACTGCTTATATTAGAAATCTGGCAAATTTGTCTGTCAACTTTAATTATTAAGAGGTGGTTTTGTCTTTCCTCAGGCCGCGTTCACTGTTGTGGCTTTACTGAAACCGTGATCCGATTGGTTGCCTCTGCTGTGGTGGGCGTGGCTGTTATTGCTGTGCTGGTTTATGATGTCAGATCCAGCAGATCTTACCAGAAGAGGAGACTGCAGACGGCATCAGGGCAAGcagatgattatgatgatgtcGCAACAGCTCACTAGGTGGCGATGATGTCGCCTTTGTCTGTTATGGCTGTCGGAAATATTCCAGGTTAAATGCATTCACAGGAATGATCTAATGGACGCTTGGGTTTTAACCCTTCGCTGACTGATCGTAGTGCCATCTGGTGGTTATTTGTGgcacttattgttttatttgacaaataGGCTGCGTGTATGttgctgtgtttatttttttgctgcacTTTTTGatgtaattatacatttttttatgccttaataagtttattttaatatgttgtttgattatttgctgttaatttacataTTATGTATAATACTTGAATGGACTGTTATGAAATTGATGGCTTGTTTGTTACATTCATGccatttttttagtattttaggTTTCAACAAAGAATTAATTGTAATATCGAGCAAAGTTATTAAAGACAGAACATTTTCACGGATATTAACCTGTCGGTCTTGCTCAGGATGCATTTCAAATTAGTTTTGCtgtatttgtttaataataaatcacCAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000091230

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040133 True 1706 mRNA 0.43 3 8612462 8748801

Neighbor

gene id symbol gene type direction distance location
XLOC_020172 si:ch73-27e22.6 coding upstream 10687 8596974 ~ 8601775 (+)
XLOC_020171 NA coding upstream 37555 8570105 ~ 8574907 (+)
XLOC_020170 zmp:0000000984 coding upstream 58671 8551813 ~ 8553791 (+)
XLOC_020169 si:ch73-27e22.7 coding upstream 68833 8536838 ~ 8543629 (+)
XLOC_020168 CABZ01046407.1 coding upstream 121202 8489400 ~ 8491260 (+)
XLOC_020179 si:dkey-182g1.2 coding downstream 4291 8753092 ~ 8770357 (+)
XLOC_020180 si:dkey-182g1.10 coding downstream 23562 8772363 ~ 8809496 (+)
XLOC_020181 NA coding downstream 72696 8821497 ~ 8837723 (+)
XLOC_020182 NA coding downstream 89624 8838425 ~ 8854534 (+)
XLOC_020183 NA coding downstream 137247 8886048 ~ 8894141 (+)
XLOC_020166 NA non-coding upstream 117103 8375766 ~ 8495359 (+)
XLOC_020164 NA non-coding upstream 255953 8339205 ~ 8356509 (+)
XLOC_020161 NA non-coding upstream 297594 8297633 ~ 8314868 (+)
XLOC_020159 CABZ01077220.2 non-coding upstream 346813 8265533 ~ 8265649 (+)
XLOC_020184 NA non-coding downstream 178564 8927365 ~ 8953552 (+)
XLOC_020189 NA non-coding downstream 317285 9066086 ~ 9066418 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_08742145_08754205 NA coding CI01000030 null 8742040 ~ 8755601 (-)