G58229


Basic Information

Item Value
gene id G58229
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 52996626 ~ 52996842 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU64733
GGACCCTCTATCCTGCTTCTCCTCCTGAAGCTTGTTGTAtttcgactataaaataattacaGAATCACTCGCCAAAAGACgaaacactcttcttcccaaaataataaaagtggACAAAACCGGATGTATTAGAGATAGgtactcttctgataacattttCCAACTTTTTTATATTATAGATCAAGTAAACACACAAAAGACCCCTGTCccgctggct

Function

NR:

description
Retrovirus-related Pol polyprotein LINE-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64733 True 217 lncRNA 0.38 1 52996626 52996842

Neighbor

gene id symbol gene type direction distance location
LOC118964862 NA coding upstream 11377 52965815 ~ 52988549 (+)
LOC110524905 s35b4 coding upstream 33794 52955803 ~ 52962832 (+)
LOC110524881 LOC106573069 coding upstream 59751 52925635 ~ 52936875 (+)
LOC110524847 LOC106561671 coding upstream 71153 52904644 ~ 52925473 (+)
LOC110524844 LOC106573071 coding upstream 106766 52882870 ~ 52889860 (+)
LOC110524916 LOC106573063 coding downstream 11142 53007984 ~ 53047685 (+)
LOC110524927 LOC106573064 coding downstream 63111 53059953 ~ 53072748 (+)
LOC110524948 LOC106573061 coding downstream 84131 53080973 ~ 53149689 (+)
LOC110524999 LOC106573060 coding downstream 162391 53159233 ~ 53181760 (+)
LOC110525010 LOC106573059 coding downstream 190176 53187018 ~ 53233174 (+)
G58205 NA non-coding upstream 53369 52942885 ~ 52943257 (+)
G58134 NA non-coding upstream 133852 52862572 ~ 52862774 (+)
G57811 NA non-coding upstream 247998 52744356 ~ 52748628 (+)
LOC110524804 NA non-coding upstream 294014 52698680 ~ 52702647 (+)
G58230 NA non-coding downstream 382 52997224 ~ 52997430 (+)
G58192 NA non-coding downstream 34281 53031123 ~ 53031953 (+)
G58278 NA non-coding downstream 207234 53204076 ~ 53206257 (+)
G58187 NA non-coding downstream 236693 53233535 ~ 53314985 (+)
G58181 NA non-coding downstream 337899 53334741 ~ 53337311 (+)
LOC110524575 fgf3 other upstream 1545691 51449353 ~ 51451460 (+)
LOC118964841 NA other upstream 2912630 50037523 ~ 50184257 (+)
G53181 NA other upstream 4102714 48893497 ~ 48893912 (+)
G52324 NA other upstream 4613369 48380542 ~ 48383257 (+)
G52080 NA other upstream 4971668 48006674 ~ 48024958 (+)
LOC118936380 LOC106581842 other downstream 669373 53632830 ~ 53705421 (+)
G59031 NA other downstream 991298 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 1048007 54044813 ~ 54089850 (+)
G59963 NA other downstream 1724346 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 2908666 55905508 ~ 55923376 (+)

Expression


Co-expression Network