XLOC_020188 (si:ch211-213a13.2)


Basic Information

Item Value
gene id XLOC_020188
gene name si:ch211-213a13.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9060699 ~ 9096248 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040153
ccggccggccgcatatccgatcaACGTTAGACTGTGGTGGCGTAGATGCGTTAAGACCTTGCTAATTCAATTTTTTAACATATAAATTTACAGATATCGATTTAACATGGTGCATAGATTCGCAATCCATCTACAGCCAGTCGGACTTATTCTGCTGGAAACATGTTTGAGTTTGGACGTATTTTCTTCGTAATTAACAAAACTGCTGGCGAGCTCAGATTGAACTGGTGAAGGTTTACACAAGCCAGCGTTGATCTTCAGTATGTCAGAGATGGAAGGGGCCTCTCCTAAGATGAGTCTCCCAGAGAAACACCGTATGAGATCAGGTTCACATGCACCCAGCtctgtgtctatgaagagtgattGGTCAATGGAAAAACCACCAGACCTGACAAGTGAGGGGAAACCTGCATCTACCACAAGCTTtttgtctctgaagagtgactggtcgATGGAAAAACCACCAGACCTGACCTGTAAAAGAAAACTCATGTCTACCAAAAGGCTTTTATCTGAGACACAAGATTTCCAGGCTCACAAAAACCACAAGAATTTTACAGACAATCTTCAAGAGATTTTCAAGAATCTGGAAAGCCAAATAATCTCATTCCTTACCAACGagtttgaaatgtttaaaaaaatattactaagagtaaacacaaataattttgtaaaGGATTTTAATGAGAACAGATGCAGCATCagagaagcagctcttgatctcacactctacTTCCTGAGAGAAATGAAGCAAGATGAAGCTGCAGATACTCTAGAAGATGAGCTGTTCTTCATTCATCAGCTGAAATGTGGCCTACAGAAGAAGTATCagtgtgtgtttgaaggaattgcacagcaaggagactccacactccTGAAgaacatctacacagatctctatatcactcagggtggCAGTGAACAGGTCAATACTAAACATGAGGTCAGACAGATTGAAGTTACTTCTAGACACCATGAAGCTCaagagatacaggttgaatgcagACATTTGTTTGAAGCGTCTGAACAAGACAAGCAGATCAGAACTGTACTGACAAAAGGAGtcgctggcatcgggaaatcagtctctgtgcaaaagtttgttctggattgggctgaaggaaAGGAAAATCAAgagatcagcttcatatttcctcttccattcagagagatgaacttaaaggagaaagaaacaCTCAGTTTGATGGAGCTTATAACTCAGTTTTACCCAGAGAcaaaaggactgaaccttacaagaaggaatcgattcaaagtcctgttcatccttgatggattggatgaatgtcgtcttcctctgaactttgctggtaatgagacgtgttgTGATGTTTCGTCaccagtctctctggatgttctcctgacgaatctcatcaagggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgccagtaagattcctccTGACTGTATCGACAGAGTGACAGAAGTTAGAGGATTCAATGATGAACAAAAGGTCGAGTACTTCAGAAAAAGACTCACAGATGAGAATCAGGCCAAAGAAATCATTGATCATGTTAAACAATCAAAGAGTCTCTtcatcatgtgccacatcccagtcttctgctggatttcagccactgttctccagaacttTTTACAGGAGAAGAGAAATAATGATGTGAAACACAATCAGGCTGATtccaaaacactgcaggaatCAAACACTGAAGAcactcccaagactctgacacagatgtacacacactttctgcgctttcagatccagcagagcagacgaaagtatgatggagaaaacacaccaGATGTGTCCTGGGATAAAGACgccatcctttcactggggaaactggcatTTCAGCAGCTGCTAAACAGCAACCTGATCTTCTATGACACAGACCTGGAAGCCTGTGGTATTGACGTCTATAAGGCCTCAGtttactcaggcatgtgtacccagatctttaagaaGGAAACAGGGATTgttcttggtaccatgtactgctttgtTCACTTGAGCGTTCAAGAGTTTATTGCAGCCCTTTATGCACATCTGATTCTAGACATCAACAAGAAAAGTGTGTTTGATCAAGACTCTAGAAACAGAAATGAGTCCATGATTGATTTgctgaagactgcagtggacaaggcACTTGAGAGTGACAATGGACACCTGGACCTTTTCCTTCGCTTTCTTCTTGGTCTGTCTCTCCAGTCAAATCGGCGACTCTTACGAGGTCTGTTTGCACAGCACGACCACAATAACAAATGGAACATATGGAGCATATGGAAAATATTTCAGTACTTCTTTAGAACAGCAGATCAGCAGCAAGACCACAATGACCTTAGCAAAGAGGAAATAGTTCAGTACCTCAAGCAGAAGTTTGAAGCGAATCtttctccagagagatccatcaatctgttctactgtctgaatgaactgaacgaccaaactctggTGAAAGAAATTCAGACTCGCCTTAGTAAAGGAAGTCTCTCATCTGCTGatctttcacctgcccagtggtctgctttggcctttgtgttgttgacatcagaggaggagatggaggagtttgagctccaGAAATTCAAGaaatcagacgagtgtctcatcagactatcagcagtcatcaaaacctccaaaagagctctGCTCAGTAAGTGTAATCTAACAGAGGAAAGCTGTTCAGCTCTTGCTTCAGTTCTCAGATCAGACTCCAGCAGTCTGAAGGATCTTGACCTGAGCAAtaataatctgcaggattcaggagtgaagctgctctctgatggactgaaggacAACTGTAAATTGGAGAAACTCGGACTATCAGACTGCAGTATCAGTGAAGAAGGTTATAaagctctggcttcagctctgagatcaaacccttcacacctgatagagctggatctcagaggaaatgatcctggaccatcaggAGTGAAGGAGCTCACTGATGCATTACTGGATACAAAGTGTAAAGCAAAACTGAGGTTTTTGAGTTCTGCTGCTGATGAATTCTGTCAGTTTGTGACTGGAATTATGGGTAAAAACCCGTTACTCCTGAAAGAACTGAATCTGAGTGATCGTGAACTAGGAGACACACGAGTGAATCAACTCTCTGATCTACTGCAGGACAAACACTGTCAGATCAACACACTCATgctGAAGAATAACAGGATTACAGCAGAAGGTTGTGCTGACTTGATGTCCGCATTTAATTCAAACCCTTCACACCTGACAGAGCTCAATCTGAGTGTGAATGAACTAGGAGACTTAGGAGTAGAGAAGATCTGTCCACTGCTGGAAAATACACTGTGCAGATTGGAGAAATTAAATCTGTCAGACTGCAGTATCACTGGACAAAGTTATGAAACTTTGGCTTCAGTTCTGAGATCAAACTTGTATCTAAAAGAGCTAGATCTCAGAGGAAATGATCCTGGAAAATCAGGAGTGAAAAAGTTCATTGATTTCCTGCAGGAGGGATCATGTAAATTACAGATTATCCGGTTTCTGAAGAGTCCTGATGCAGAGGAAGCATGCGAGTATCTCACTAAAGATTTGGTCATAAATCCATTATTACTGACAGAACTGGATCTAAGTAAAGTTAAATTAGGACATCTGGATGGAGAgaaattctctgcttttttgaTGGACTCGCATAATAAAGTGGAGAAAATAAAGCTGAATAACTGTAAGCTGACAGAGAAAAGCTGTTCAGTTCTAGCTGCTGTTCTCTCCTCCAAAACCATCCTGAAAGAGATGAACCTGAACAACAGTCGTCTGCTGGACTCAGGAGTCAGAAAGATCTGTGAGGGACTGAAGAATCCTGTGTGTGAGCTGAAGATACTCAAGTTATTGAGTCCAGCTGCTGATGAAGCCTGTTCGTTTGTGGCTGTACATGTGGGTGAAAACCCGTTACTCCTGAAAGAACTGAATCTGAGTAATTATGAACTAGGAGACCCACGAGTGAATCAACTCTCTGCTCTACTGCAGGATAAACACTGTAAACTCAACACACTCATGCTCAGTAATTGTGGTCTAACAGAGGAAAGCTGTTCAGCTCTTGCTTCAGTTCTCAGATCAGACTCCTGCAGTCTGAAGGATCTTGACCTGAGCAATAATAATCTGCAGAATTCAGGAGTGAAGcggctctctgatggactgaaggacAACTGTAAATTGGAGAAACTCAGACTATCAGACTGCAGTATCAGTGAAGGAGGTTATAaagctctggcttcagctctgagatcaaacctttcacacctgatagagctggatctcagaggaaatgatcctggacaatcaggaGTGAAGGAGCTCACTGACTTACTGCAGGATCCACACTGTACACTGAAGACACTGAGGTTTCTTAGTTCTGCTGTAGAGGAAGTCTGTAAACATTTGTCTGATGTTCTCACTGGGGACCCGTTAATCCTGAAAGAACTGAATCTGGGTGGATGTAAAATAGAAGACAAAGTGAGTTATCTTGCTACTCTACTGCAGGATAAACACTGTCAGATCAGCACACTGGTGCTGAACAATACCAGTATTACAGAAGAGGGTTGTGCTAATCTGACTTCAGCAATTACGTTAAACCCATCACACCTGAGGGAACTGAACCTAAGTGATAATAAACTAGGAGACTCTGCAGTGAAAAACCTCAGTGATTTACTGATAAAGACACAATTCAAGCTGGAGAAACTACATTTGAGTAATTGCAGTATTACAGAGGAACAGTGTGTGATCCtgacttcagctctgaaatcaaACCCATCACACCTGAGAGAACTGAACCTCAGTGTGAATGAAATGGGAGACTCTGCAGTGAAAAACTTAAGGGATTTTCTGATGAAGCCACAATGCAATCTGGAGAAACTACTTCTGCGTCAATGCAGTATTACAGAGAAGCAGTGTGAGATCCtgacttcagctctgaaatcaaACCCATCACACCTGAGAGAACTGGACCTCAGTAGAAATGAAATAAACAACACAGGAGTAAATCTTTTATCTGAAGTACTGAAGGAttcacactgtaaactggagagaTTGAGTCTAATTGAATGTGGCATCACAGATGTTTCCTCTTTTGCTCACAATTTGATGAACACAGAAACCCTGAAAGAGCTTGATCTTAGAAACAATTCTATATTAATTTCAAGGCGGAAACTGTTATATGTGCTATCAGACTCTAACTGTAAACTGAGCCTAGACAAGGGTAACTTGCATCAACGTTTTGCTGAATTATTTTTTGATAATCAGTGAACCCATCATCATCAGGTGCCATGGAGGATGAAGAATGGTCTGCTCAGGGCTCAGATATGTACTTTCAGCAGACATCTGGCTCTAAAGTATAAAGTCCTGATGGAAGTAATTTGCCTTTCAAAGAATATAAGTGTTAAGTGTATACCTTAAATACGTTATACTCCATGTGGCACTTCTGGTTTACATTATATCTTTCTGACATTGAATATACGAActatgtttgtttacatttaaaccaTAATAGTTGTCATGAATGAACAAATCAAATAGTCTTTAATCTTCTCATGTATTAGTTTGCTGTATTATAAATTCATCCTGTTTCAGGAcgttttattaaacttttactgAAATGAAGCTACCAAAATGACTAATTTTGTCACAGTGTGCTGTAATAATAAAAGACCACCAGACTTACAGAAAATCTTGAATTTAACATGTTTAGTGCTTTAAGTCAaaaccagaataaaaaaaaataactgacaGTTTTTATAATCTTCATCATATTGTttttgagtgatttttttttttattgtataatgtGCCATGACGCTCCTGCCCTAATTTAATTGCCCCTTGAgggattaataaagttgttaaactATAACAATGTTGTTTTCAAAATTTTTATTATAGCAAACAGTATTTTGAATATGCACTTTTAGACAGAAAGGTACAAAAGCCG
>TCONS_00040154
atgtttaaaaaaatattactaagagtaaacacaaataattttgtaaaGGATTTTAATGAGAACAGATGCAGCATCagagaagcagctcttgatctcacactctacTTCCTGAGAGAAATGAAGCAAGATGAAGCTGCAGATACTCTAGAAGATGAGCTGTTCTTCATTCATCAGCTGAAATGTGGCCTACAGAAGAAGTATCagtgtgtgtttgaaggaattgcacagcaaggagactccacactccTGAAgaacatctacacagatctctatatcactcagggtggCAGTGAACAGGTCAATACTAAACATGAGGTCAGACAGATTGAAGTTACTTCTAGACACCATGAAGCTCaagagatacaggttgaatgcagACATTTGTTTGAAGCGTCTGAACAAGACAAGCAGATCAGAACTGTACTGACAAAAGGAGtcgctggcatcgggaaatcagtctctgtgcaaaagtttgttctggattgggctgaaggaaAGGAAAATCAAgagatcagcttcatatttcctcttccattcagagagatgaacttaaaggagaaagaaacaCTCAGTTTGATGGAGCTTATAACTCAGTTTTACCCAGAGAcaaaaggactgaaccttacaagaaggaatcgattcaaagtcctgttcatccttgatggattggatgaatgtcgtcttcctctgaactttgctggtaatgagacgtgttgTGATGTTTCGTCaccagtctctctggatgttctcctgacgaatctcatcaagggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgccagtaagattcctccTGACTGTATCGACAGAGTGACAGAAGTTAGAGGATTCAATGATGAACAAAAGGTCGAGTACTTCAGAAAAAGACTCACAGATGAGAATCAGGCCAAAGAAATCATTGATCATGTTAAACAATCAAAGAGTCTCTtcatcatgtgccacatcccagtcttctgctggatttcagccactgttctccagaacttTTTACAGGAGAAGAGAAATAATGATGTGAAACACAATCAGGCTGATtccaaaacactgcaggaatCAAACACTGAAGAcactcccaagactctgacacagatgtacacacactttctgcgctttcagatccagcagagcagacgaaagtatgatggagaaaacacaccaGATGTGTCCTGGGATAAAGACgccatcctttcactggggaaactggcatTTCAGCAGCTGCTAAACAGCAACCTGATCTTCTATGACACAGACCTGGAAGCCTGTGGTATTGACGTCTATAAGGCCTCAGtttactcaggcatgtgtacccagatctttaagaaGGAAACAGGGATTgttcttggtaccatgtactgctttgtTCACTTGAGCGTTCAAGAGTTTATTGCAGCCCTTTATGCACATCTGATTCTAGACATCAACAAGAAAAGTGTGTTTGATCAAGACTCTAGAAACAGAAATGAGTCCATGATTGATTTgctgaagactgcagtggacaaggcACTTGAGAGTGACAATGGACACCTGGACCTTTTCCTTCGCTTTCTTCTTGGTCTGTCTCTCCAGTCAAATCGGCGACTCTTACGAGGTCTGTTTGCACAGCACGACCACAATAACAAATGGAACATATGGAGCATATGGAAAATATTTCAGTACTTCTTTAGAACAGCAGATCAGCAGCAAGACCACAATGACCTTAGCAAAGAGGAAATAGTTCAGTACCTCAAGCAGAAGTTTGAAGCGAATCtttctccagagagatccatcaatctgttctactgtctgaatgaactgaacgaccaaactctggTGAAAGAAATTCAGACTCGCCTTAGTAAAGGAAGTCTCTCATCTGCTGatctttcacctgcccagtggtctgctttggcctttgtgttgttgacatcagaggaggagatggaggagtttgagctccaGAAATTCAAGaaatcagacgagtgtctcatcagactatcagcagtcatcaaaacctccaaaagagctctgtaa
>TCONS_00040155
ATTCCCTGTTCCAGACTATCAGACTGCAGTATCAGTGAAGGAGGTTATAaagctctggcttcagctctgagatcaaacctttcacacctgatagagctggatctcagaggaaatgatcctggacaatcaggaGTGAAGGAGCTCACTGACTTACTGCAGGATCCACACTGTACACTGAAGACACTGAGGTTTCTTAGTTCTGCTGTAGAGGAAGTCTGTAAACATTTGTCTGATGTTCTCACTGGGGACCCGTTAATCCTGAAAGAACTGAATCTGGGTGGATGTAAAATAGAAGACAAAGTGAGTTATCTTGCTACTCTACTGCAGGATAAACACTGTCAGATCAGCACACTGGTGCTGAACAATACCAGTATTACAGAAGAGGGTTGTGCTAATCTGACTTCAGCAATTACGTTAAACCCATCACACCTGAGGGAACTGAACCTAAGTGATAATAAACTAGGAGACTCTGCAGTGAAAAACCTCAGTGATTTACTGATAAAGACACAATTCAAGCTGGAGAAACTACATTTGAGTAATTGCAGTATTACAGAGGAACAGTGTGTGATCCtgacttcagctctgaaatcaaACCCATCACACCTGAGAGAACTGAACCTCAGTGTGAATGAAATGGGAGACTCTGCAGTGAAAAACTTAAGGGATTTTCTGATGAAGCCACAATGCAATCTGGAGAAACTACTTCTGCGTCAATGCAGTATTACAGAGAAGCAGTGTGAGATCCtgacttcagctctgaaatcaaACCCATCACACCTGAGAGAACTGGACCTCAGTAGAAATGAAATAAACAACACAGGAGTAAATCTTTTATCTGAAGTACTGAAGGAttcacactgtaaactggagagaTTGAGTCTAATTGAATGTGGCATCACAGATGTTTCCTCTTTTGCTCACAATTTGATGAACACAGAAACCCTGAAAGAGCTTGATCTTAGAAACAATTCTATATTAATTTCAAGGCGGAAACTGTTATATGTGCTATCAGACTCTAACTGTAAACTGAGCCTAGACAAGGGTAACTTGCATCAACGTTTTGCTGAATTATTTTTTGATAATCAGTGAACCCATCAT
>TCONS_00041883
GACAAGGGTAACTTGCATCAACGTTTTGCTGAATTATTTTTTGATAATCAGTGAACCCATCATCATCAGGTGCCATGGAGGATGAAGAATGGTCTGCTCAGGGCTCAGATATGTACTTTCAGCAGACATCTGGCTCTAAAGTATAAAGTCCTGATGGAAGTAATTTGCCTTTCAAAGAATATAAGTGTTAAGTGTATACCTTAAATACGTTATACTCCATGTGGCACTTCTGGTTTACATTATATCTTTCTGACATTGAATATACGAActatgtttgtttacatttaaaccaTAATAGTTGTCATGAATGAACAAATCAAATAGTCTTTAATCTTCTCATGTATTAGTTTGCTGTATTATAAATTCATCCTGTTTCAGGAcgttttattaaacttttactgAAATGAAGCTACCAAAATGACTAATTTTGTCACAGTGTGCTGTAATAATAAAAGACCACCAGACTTACAGAAAATCTTGAATTTAACATGTTTAGTGCTTTAAGTCAaaaccagaataaaaaaaaataactgacaGTTTTTATAATCTTCATCATATTGTttttgagtgatttttttttttattgtataatgtGCCA

Function

symbol description
si:ch211-213a13.2 Predicted to be involved in intracellular signal transduction.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000074546

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040153 False 5975 mRNA 0.41 24 9060699 9096248
TCONS_00040154 False 2049 mRNA 0.43 2 9069081 9071211
TCONS_00040155 False 1098 mRNA 0.41 7 9091913 9094070
TCONS_00041883 True 598 lncRNA 0.31 2 9094008 9096110

Neighbor

gene id symbol gene type direction distance location
XLOC_020187 si:ch211-213a13.2 coding upstream 3591 9009496 ~ 9057108 (+)
XLOC_020186 rnh1 coding upstream 51511 9003090 ~ 9009188 (+)
XLOC_020185 si:ch211-213a13.1 coding upstream 64362 8979955 ~ 8996337 (+)
XLOC_020184 NA coding upstream 107147 8927365 ~ 8953552 (+)
XLOC_020183 NA coding upstream 166558 8886048 ~ 8894141 (+)
XLOC_020190 nlrp15 coding downstream 14750 9110998 ~ 9226882 (+)
XLOC_020191 si:ch211-250k18.5 coding downstream 143583 9239831 ~ 9255288 (+)
XLOC_020192 si:ch211-250k18.6 coding downstream 166552 9262800 ~ 9279332 (+)
XLOC_020193 si:ch211-250k18.7 coding downstream 190241 9286489 ~ 9315124 (+)
XLOC_020194 NA coding downstream 226509 9322757 ~ 9323817 (+)
XLOC_020182 NA non-coding upstream 206165 8838425 ~ 8854534 (+)
XLOC_020181 NA non-coding upstream 222976 8821497 ~ 8837723 (+)
XLOC_020176 CR450686.2 non-coding upstream 360769 8695096 ~ 8699930 (+)
XLOC_020195 NA non-coding downstream 245207 9341455 ~ 9343000 (+)
XLOC_020196 BX927329.2 non-coding downstream 255124 9351372 ~ 9359403 (+)
XLOC_020197 NA non-coding downstream 263651 9359899 ~ 9383484 (+)
XLOC_020205 NA non-coding downstream 686706 9782954 ~ 9791367 (+)

Expression


Co-expression Network