XLOC_020189


Basic Information

Item Value
gene id XLOC_020189
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9066086 ~ 9066418 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041882
gtaaaactgaatatttcattaattacacattggacaattaaaaaatattttaatcctaaTTTCATTAGTGTCATGTGAGCATTTATAGGAAGTAGAATGTTTGGCTAAAAAGTTACTACAATTTATCAACTACCCATAAAGATTTTTCATGCTacaatttattatgattttttacgTATTACTAAATTCATCCATTACAGAGttgacaaacaatatatataaaaaacattttattccctaaaagtaaaacatgaatgaaaaatgaatataataatatttacaactgaAGTGTTTTCTTAATGCTGGAATTTCCAACTTCGTGATGATACCTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041882 True 333 lncRNA 0.25 1 9066086 9066418

Neighbor

gene id symbol gene type direction distance location
XLOC_020187 si:ch211-213a13.2 coding upstream 8978 9009496 ~ 9057108 (+)
XLOC_020186 rnh1 coding upstream 56898 9003090 ~ 9009188 (+)
XLOC_020185 si:ch211-213a13.1 coding upstream 69749 8979955 ~ 8996337 (+)
XLOC_020184 NA coding upstream 112534 8927365 ~ 8953552 (+)
XLOC_020183 NA coding upstream 171945 8886048 ~ 8894141 (+)
XLOC_020190 nlrp15 coding downstream 44580 9110998 ~ 9226882 (+)
XLOC_020191 si:ch211-250k18.5 coding downstream 173413 9239831 ~ 9255288 (+)
XLOC_020192 si:ch211-250k18.6 coding downstream 196382 9262800 ~ 9279332 (+)
XLOC_020193 si:ch211-250k18.7 coding downstream 220071 9286489 ~ 9315124 (+)
XLOC_020194 NA coding downstream 256339 9322757 ~ 9323817 (+)
XLOC_020182 NA non-coding upstream 211552 8838425 ~ 8854534 (+)
XLOC_020181 NA non-coding upstream 228363 8821497 ~ 8837723 (+)
XLOC_020176 CR450686.2 non-coding upstream 366156 8695096 ~ 8699930 (+)
XLOC_020195 NA non-coding downstream 275037 9341455 ~ 9343000 (+)
XLOC_020196 BX927329.2 non-coding downstream 284954 9351372 ~ 9359403 (+)
XLOC_020197 NA non-coding downstream 293481 9359899 ~ 9383484 (+)
XLOC_020205 NA non-coding downstream 716536 9782954 ~ 9791367 (+)
XLOC_020174 NA non-coding upstream 304456 8621298 ~ 8761630 (+)

Expression


Co-expression Network