XLOC_020222 (tbc1d20)


Basic Information

Item Value
gene id XLOC_020222
gene name tbc1d20
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 10129788 ~ 10141469 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040205
TCCGTGATCCCGGTTCAGTTCGGCGGATCTCGCTCATTTAAACCCCTGTCATGCGCCACACACACCGGACAGACAGATGACTTTCAACGGACAAGAGTTTATTGAGCTGCGCGGGCCTGAATGAGATGATGTGGCCTTTAAGTTAGCAGAGCAGCTAAACCTGTTGTGTTTTTCTGTGGAGTAAAACGATGGAGCTCGAGTTTGAACATTAGCCACAGGATGAATCTGAAGAGGTCGCGGAGTGTCGGAGCTTCCCCGCTCAATGGAGTCGGAAAACAAGACGTGGAGAGTAGACGCAGAAAGAAGATGTCTGAGATCACGCAGGCTCTGAGCTGCCGGCCTGTGGACGTTGCGGCTCTGAGACGAATGGCCATCAGTGAAGGAGGTCTAATGACCGACGAGATCAGACGCCTGGTGTGGCCCAAACTGCTCAACGTCTCTGAGGAAAACATACCAGAGGAACTGGATCCTGTCGATCGAGAAAACAACAAAGACTTTAACCAGGTTCTTCTTGATGTTCAGCGGTCACTTAGACGCTTTCCTCCAGGGATGCCGGATGAGCAGCGTGAGGGTCTTCAGGAGGAGCTCACCGATATTATTCTGCGTGTTTTGGTGAAAAACCCTCAGCTGCATTACTATCAGGGTTATCATGACATCGTGGTCACTTTCCTGCTGGTGCTCGGAGAGAGACTCGCCACTGCCCTCGTGGAGAAACTCTCCACACACCACCTCAGGGACTTTATGGACCCCACGATGGACAACACTAAACACATCCTGAACTATCTGATGCCCATCATCGAGAGGGTCAATCCTGAGGTCTTCGACTTCATGCAGCAGGCTGAAGTGGGCACCATATTCGCCCTCAGCTGGCTGATCACCTGGTTCGGGCACGTCCTGTCAGATTTCCGCCACGTGGTTCGGTTGTATGATTTCTTCCTGGCCTGCCATCCGCTCATGCCCATCTACTTCGCTGCAGTGATCGTGTTGCATCGTGAGGAGGAGGTCTTGGACTGTGAGTGTGACATGGCCATGATGCACCACCTCCTGTCCCGCATCCCAGAGGACCTGCCGTATGAAACGCTGATCAGCCGCGCTGGAGATCTGTTCGTGCAGTTTCCTCCATCAGAGCTAGCCAGAGAGCGCAGTCAGCAAACGGCAGTCTCCACATTTAAAGACTTTGAGCTGGCGTCGACGCAGCAGCGGCCGGACGTGGTGCTTCGCCAGAGACGGAAAGAGCAGCAGCAGCGAACACTGGAGGCTCAGCGCGGGACTGTGGCGGTGGTTCAGCCTACGGCACGCCGCTTCATGAGGTTAGCGGTGATGGGTTTGACGGTGGCACTGGGAGCCGCGGCGCTGGCCGTGGTGAATTCAGCTCTGGAATGGGCTCCGAAATTAGACTTACTGTTTCCGTGA

Function

symbol description
tbc1d20 Predicted to enable GTPase activator activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in Warburg micro syndrome 4. Orthologous to human TBC1D20 (TBC1 domain family member 20).

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-050626-61 Predicted to enable GTPase activator activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in Warburg micro syndrome 4. Orthologous to human TBC1D20 (TBC1 domain family member 20).

Ensembl:

ensembl_id ENSDARG00000032298

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040205 True 1413 mRNA 0.54 8 10129788 10141469

Neighbor

gene id symbol gene type direction distance location
XLOC_020221 NA coding upstream 32561 10073420 ~ 10097227 (+)
XLOC_020220 si:ch211-222k6.3 coding upstream 58492 10066846 ~ 10071296 (+)
XLOC_020219 NA coding upstream 80555 10018900 ~ 10049233 (+)
XLOC_020218 BX324216.4 coding upstream 115419 10010292 ~ 10014369 (+)
XLOC_020217 BX324216.1 coding upstream 122789 9994833 ~ 10006999 (+)
XLOC_020223 NA coding downstream 16994 10158463 ~ 10164865 (+)
XLOC_020224 pxk coding downstream 24938 10166407 ~ 10199014 (+)
XLOC_020225 pdhb coding downstream 60357 10201826 ~ 10212502 (+)
XLOC_020226 NA coding downstream 73525 10214994 ~ 10222660 (+)
XLOC_020227 si:dkeyp-87e7.4 coding downstream 91058 10232527 ~ 10262441 (+)
XLOC_020216 NA non-coding upstream 138294 9989905 ~ 9991494 (+)
XLOC_020212 NA non-coding upstream 225165 9897971 ~ 9904623 (+)
XLOC_020211 NA non-coding upstream 225290 9886745 ~ 9904498 (+)
XLOC_020228 NA non-coding downstream 158934 10300403 ~ 10354336 (+)
XLOC_020240 BX666064.1 non-coding downstream 941307 11082776 ~ 11085979 (+)
XLOC_020241 NA non-coding downstream 949159 11090628 ~ 11098487 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_08144020_08149228 TBC1D20 coding CI01000030 null 8143888 ~ 8149228 (-)