XLOC_020220 (si:ch211-222k6.3)


Basic Information

Item Value
gene id XLOC_020220
gene name si:ch211-222k6.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 10066846 ~ 10071296 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040200
ATACCCGTGCTCGTGCATCTGGCTTACAGGGCGGTGCTTTGTTTTTCTGTACTATTCTCAGCAGTCGATTTCAGAGTTTGTGAGGACGTTTTCAGCACCTcgaaaatagttttaataattgcCTTTATTTAAAGCTTCTAAATGTGCAAACAGTTTTAGATAAGGATTTAGGAAGCATCAAAAAACCGTCTTTCGTCTCTTGTAGTTTTACCTCCGCAGGCAGTTCTTCTCGGATTACATCATCATGTTCAATTTAATCATCTTTACGGCAAAATGTTGAAGATTTATATTAGCAAAGCCACGTTATGCCTGTTTCTGTCGCTCATTCGAGgtgtgtttggtgctGATGCGGATGAAGTGAAGTCAGTATCAGTGACTGAGAGAGATTTTGTCACTTTAAACACTGATGTTACTGAAGTACAGAAAACTGATCAGATATTGTGGATGTTTGGACCTCAAGAGACTCGTATTGCTGAAATACATAAGCAGAGCATTGACATGTTTGACAGCAATGAGACATTTGGAGACAGACTGAAGATGAACAGAcaaactggatctctgaccatcacagaCATCACAACTGAACTCTCTGGACTTTATAAACTGACCATCATTACCAGTGGAGGAACTACTTATAAGAGATTCAGTGTTACTGTTTATGCTCCTCTTCCTGTTCCTGTAATCAGCAACAATACCTTAAGCAGTCAAAAACCATCCCCAGACTCCAGATGTTCAGTGTTGTGTTCAGTGTTGAATGTGAgcgctgtgagtctctcctggtacaaaggaaacagtgtattgtccagcatcagtgtATCTGATCTCAGCATCcgtctctctctacctctggaggtggaaGATCAGGATAACAACACCTACAGCTGTGTGGTCAACAACACCATCACAAACCACACCACACATCTGGACATCAGTCAGACCTGCCACACAAGTAAAAAACTCCACCTGCTGCCATTTTCCTCCCTCTTTTAATTTCTGCTTTAGTTCTGGCTGGACTTGCTGCTGCAATGTACTTCTTATATAAaaagcacaaagaaaaaaaagTTGATGGTTCCAAACCAAGTACGCAAAGACTGACAACAGCCCAGACTGAGCAGACAGATGATATAGAGATACATTATGCCGAAGCAACATTTCACCttcaaaataaacc
>TCONS_00040201
ATACCCGTGCTCGTGCATCTGGCTTACAGGGCGGTGCTTTGTTTTTCTGTACTATTCTCAGCAGTCGATTTCAGAGTTTGTGAGGACGTTTTCAGCACCTcgaaaatagttttaataattgcCTTTATTTAAAGCTTCTAAATGTGCAAACAGTTTTAGATAAGGATTTAGGAAGCATCAAAAAACCGTCTTTCGTCTCTTGTAGTTTTACCTCCGCAGGCAGTTCTTCTCGGATTACATCATCATGTTCAATTTAATCATCTTTACGGCAAAATGTTGAAGATTTATATTAGCAAAGCCACGTTATGCCTGTTTCTGTCGCTCATTCGAGgtgtgtttggtgctGATGCGGATGAAGTGAAGTCAGTATCAGTGACTGAGAGAGATTTTGTCACTTTAAACACTGATGTTACTGAAGTACAGAAAACTGATCAGATATTGTGGATGTTTGGACCTCAAGAGACTCGTATTGCTGAAATACATAAGCAGAGCATTGACATGTTTGACAGCAATGAGACATTTGGAGACAGACTGAAGATGAACAGAcaaactggatctctgaccatcacagaCATCACAACTGAACTCTCTGGACTTTATAAACTGACCATCATTACCAGTGGAGGAACTACTTATAAGAGATTCAGTGTTACTGTTTATGCTCCTCTTCCTGTTCCTGTAATCAGCAACAATACCTTAAGCAGTCAAAAACCATCCCCAGACTCCAGATGTTCAGTGTTGTGTTCAGTGTTGAATGTGAgcgctgtgagtctctcctggtacaaaggaaacagtgtattgtccagcatcagtgtATCTGATCTCAGCATCcgtctctctctacctctggaggtggaaGATCAGGATAACAACACCTACAGCTGTGTGGTCAACAACACCATCACAAACCACACCACACATCTGGACATCAGTCAGACCTGCCACACAAAAACTCCACCTGCTGCCATTTTCCTCCCTCTTTTAATTTCTGCTTTAGTTCTGGCTGGACTTGCTGCTGCAATGTACTTCTTATATAAaaagcacaaagaaaaaaaagTTGATGGTTCCAAACCAAGTACGCAAAGACTGACAACAGCCCAGACTGAGCAGACAGATGATATAGAGATACATTATGCCGAAGCAACATTTCACCttcaaaataaaccaaaaaatAAAGCAAATGGGACTGAGGAAATTATATACTCCAGTGTCAACATGATCACATGATGACATGAGACCATCCATTTAATTTCAACACAGTGCTTATGTCTGGATTTGTgcttaaaaatctgaaaaagggTAAAGGAATTCAGATGACCATATCGtgggactttttttttattttgtaaaagaaccagatacat
>TCONS_00040202
GCTTTGTTTTTCTGTACTATTCTCAGCAGTCGATTTCAGAGTTTGTGAGGACGTTTTCAGCACCTcgaaaatagttttaataattgcCTTTATTTAAAGCTTCTAAATGTGCAAACAGTTTTAGATAAGGATTTAGGAAGCATCAAAAAACCGTCTTTCGTCTCTTGTAGTTTTACCTCCGCAGGCAGTTCTTCTCGGATTACATCATCATGTTCAATTTAATCATCTTTACGGCAAAATGTTGAAGATTTATATTAGCAAAGCCACGTTATGCCTGTTTCTGTCGCTCATTCGAGgtgtgtttggtgctGATGCGGATGAAGTGAAGTCAGTATCAGTGACTGAGAGAGATTTTGTCACTTTAAACACTGATGTTACTGAAGTACAGAAAACTGATCAGATATTGTGGATGTTTGGACCTCAAGAGACTCGTATTGCTGAAATACATAAGCAGAGCATTGACATGTTTGACAGCAATGAGACATTTGGAGACAGACTGAAGATGAACAGAcaaactggatctctgaccatcacagaCATCACAACTGAACTCTCTGGACTTTATAAACTGACCATCATTACCAGTGGAGGAACTACTTATAAGAGATTCAGTGTTACTGTTTATGCTCCTCTTCCTGTTCCTGTAATCAGCAACAATACCTTAAGCAGTCAAAAACCATCCCCAGACTCCAGATGTTCAGTGTTGTGTTCAGTGTTGAATGTGAgcgctgtgagtctctcctggtacaaaggaaacagtgtattgtccagcatcagtgtATCTGATCTCAGCATCcgtctctctctacctctggaggtggaaGATCAGGATAACAACACCTACAGCTGTGTGGTCAACAACACCATCACAAACCACACCACACATCTGGACATCAGTCAGACCTGCCACACAAGTAAAAAACTCCACCTGCTGCCATTTTCCTCCCTCTTTTAATTTCTGCTTTAGTTCTGGCTGGACTTGCTGCTGCAATGTACTTCTTATATAAaaagcacaaagaaaaaaaaggtacgACTCATATTCAtgttttataacaaaacaaaagcattatTACTATTGCATTGGGGTTCCAACA

Function

symbol description
si:ch211-222k6.3 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-567 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000071578

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040200 False 1171 mRNA 0.41 5 10066846 10069938
TCONS_00040201 False 1364 mRNA 0.40 6 10066846 10071296
TCONS_00040202 True 1094 mRNA 0.40 4 10066881 10069794

Neighbor

gene id symbol gene type direction distance location
XLOC_020219 NA coding upstream 17613 10018900 ~ 10049233 (+)
XLOC_020218 BX324216.4 coding upstream 52477 10010292 ~ 10014369 (+)
XLOC_020217 BX324216.1 coding upstream 59847 9994833 ~ 10006999 (+)
XLOC_020216 NA coding upstream 75352 9989905 ~ 9991494 (+)
XLOC_020215 BX539307.2 coding upstream 82814 9981079 ~ 9984032 (+)
XLOC_020221 NA coding downstream 2124 10073420 ~ 10097227 (+)
XLOC_020222 tbc1d20 coding downstream 58492 10129788 ~ 10141469 (+)
XLOC_020223 NA coding downstream 87167 10158463 ~ 10164865 (+)
XLOC_020224 pxk coding downstream 95111 10166407 ~ 10199014 (+)
XLOC_020225 pdhb coding downstream 130530 10201826 ~ 10212502 (+)
XLOC_020212 NA non-coding upstream 162223 9897971 ~ 9904623 (+)
XLOC_020211 NA non-coding upstream 162348 9886745 ~ 9904498 (+)
XLOC_020205 NA non-coding upstream 275479 9782954 ~ 9791367 (+)
XLOC_020226 NA non-coding downstream 143698 10214994 ~ 10222660 (+)
XLOC_020228 NA non-coding downstream 229107 10300403 ~ 10354336 (+)
XLOC_020240 BX666064.1 non-coding downstream 1011480 11082776 ~ 11085979 (+)

Expression


Co-expression Network