XLOC_020223


Basic Information

Item Value
gene id XLOC_020223
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 10158463 ~ 10164865 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041885
ATTCCTAACATTGTCGCGAGATTTGACAGCACGAGAAAGCGCATGGCGCTGCGCGTGCTGTGAATGAAGGACAAACATAAGCTGTAATTCTATCTGCTGACAGACTGAACAGTGTCCGACTACAATTATGGAGGATTCCTCAAAGTTTGAGCGATATGTGTACAAAAATGCTTCAGTTTACCATTATATGAAGATATCTCTGTAAGTGGAACAGagttttggAAAAAGAAAACCGAAATATTTCTGATGCACAGTTCAAGCAATTGATTATCAGTGGCGTTAAGGACTTGTATGGCGAGATTGGCGCTTCTTTTCCGTTTGATCTGCTAAAGTTTGATCCAAAGGAGTTGACCGGTATACTACGAGTATACAACAGCGGGCTGGTGAAACTGTGGAGTGCTTTAACATTACTGGGATCCTATCAAAATGAGGCATGCGCATTCAGAGTCACACAGGTGTCACCGTTTTTGTTAGCATTGTCCGGGAATAGTCGTGAGCTGCAGTTTGGAGATCGGTGAGGGCACAGGTCGCTTTACGTCGGTGAACAGGCCTCGCTAAGCAAAACATTCAGTGCCAGAGACGTTGCACTTTTTGCTGAGCTGACAGGGGACACAAATCCTCTCCATGTCGACCCGGAGTACGCCAAAACCACCTCTTTTGAGACCCCCATTGTTCACGGAGTGCTGATTAATGGTCTGATCTCAGCAGTTCTCGGGACGAAGTTACCCGGTAAAGGCTGCGTGTTTCTCTACCAGGAAATACGCTTCCCAGCGCCGCTCTTCATCGGAGAGGAGGTTGTGGCGGAAGCAAAGGTCAAAAAGATCAAAATGTCCTTCGCTTTTATTTCTGTTTCCTGCGCTGCCAAAGACAAAGTAGTCATGGAGGGAGAGGTCATGGTCATGATGCCGCAGAACCAACAACAAGCATGAGGAATTTTGAGTTTTCGTGTGCTGCCAGGAGTTAAATGTTCCttctttgattatttttgttcttgCTCAGAgatttaatgctcattttggttttgggttaaagtttaaataaacttTACGTGATTAAATATATTAGCTCTTTGGTGTGGGAAATAACTTTGTGTGTCTAATGTAAACGAGGAGAttattttcagatctcttcaaACAGTTAtttacagggttcatacggtcatggaaaacctggaaaagtcaagaaattttgacatggcatcttccaggcctggaaaagttttgtgaaagtcatggaaattagtggAAGAAATATCTGTATGCTTGAAAATGGGTTAGTtgtccttctttttttttctttttttttttaaagcatgctctcacattattagtgctgtgtcTTTAAGCAGtatctaaataaattttacatagatataaaaattaattgaaactaa
>TCONS_00040206
CGCATGGCGCTGCGCGTGCTGTGAATGAAGGACAAACATAAGCTGTAATTCTATCTGCTGACAGACTGAACAGTGTCCGACTACAATTATGGAGGATTCCTCAAAGTTTGAGCGATATGTGTACAAAAATGCTTCAGTTTACCATTATATGAAGATATCTCTagttttggAAAAAGAAAACCGAAATATTTCTGATGCACAGTTCAAGCAATTGATTATCAGTGGCGTTAAGGACTTGTATGGCGAGATTGGCGCTTCTTTTCCGTTTGATCTGCTAAAGTTTGATCCAAAGGAGTTGACCGGTATACTACGAGTATACAACAGCGGGCTGGTGAAACTGTGGAGTGCTTTAACATTACTGGGATCCTATCAAAATGAGGCATGCGCATTCAGAGTCACACAGGTGTCACCGTTTTTGTTAGCATTGTCCGGGAATAGTCGTGAGCTGCAGTTTGGAGATCGGTGAGGTGGGCCTACATAAAAATACCTTGGGGGGAAAAAATGACATTTCTTTTAAGAAGAAGGATTTTCAGCAGAACTGTATACCATGTTGTCAATTCAGCACTGACGGTTCCTGCATCCTCCACAACAGGGCACAGGTCGCTTTACGTCGGTGAACAGGCCTCGCTAAGCAAAACATTCAGTGCCAGAGACGTTGCACTTTTTGCTGAGCTGACAGGGGACACAAATCCTCTCCATGTCGACCCGGAGTACGCCAAAACCACCTCTTTTGAGACCCCCATTGTTCACGGAGTGCTGATTAATGGTCTGATCTCAGCAGTTCTCGGGACGAAGTTACCCGGTAAAGGCTGCGTGTTTCTCTACCAGGAAATACGCTTCCCAGCGCCGCTCTTCATCGGAGAGGAGGTTGTGGCGGAAGCAAAGGTCAAAAAGATCAAAATGTCCTTCGCTTTTATTTCTGTTTCCTGCGCTGCCAAAGACAAAGTAGTCATGGAGGGAGAGGTCATGGTCATGATGCCGCAGAACCAACAACAAGCATGAGGAATTTTGAGTTTTCGTGTGCTGCCAGGAGTTAAATGTTCCttctttgattatttttgttcttgCTCAGAgatttaatgctcattttggttttgggttaaagtttaaataaacttTACGTGATTAAATATA
>TCONS_00040207
AGCAATTGATTATCAGTGGCGTTAAGGACTTGTATGGCGAGATTGGCGCTTCTTTTCCGTTTGATCTGCTAAAGTTTGATCCAAAGGAGTTGACCGGTATACTACGAGTATACAACAGCGGGCTGGTGAAACTGTGGAGTGCTTTAACATTACTGGGATCCTATCAAAATGAGGCATGCGCATTCAGAGTCACACAGGTGTCACCGTTTTTGTTAGCATTGTCCGGGAATAGTCGTGAGCTGCAGTTTGGAGATCGGTGAGGGCACAGGTCGCTTTACGTCGGTGAACAGGCCTCGCTAAGCAAAACATTCAGTGCCAGAGACGTTGCACTTTTTGCTGAGCTGACAGGGGACACAAATCCTCTCCATGTCGACCCGGAGTACGCCAAAACCACCTCTTTTGAGACCCCCATTGTTCACGGAGTGCTGATTAAT
>TCONS_00040208
TtatttcctattattaagaatatttattattgtcaCAGAACTGTATACCATGTTGTCAATTCAGCACTGACGGTTCCTGCATCCTCCACAACAGGGCACAGGTCGCTTTACGTCGGTGAACAGGCCTCGCTAAGCAAAACATTCAGTGCCAGAGACGTTGCACTTTTTGCTGAGCTGACAGGGGACACAAATCCTCTCCATGTCGACCCGGAGTACGCCAAAACCACCTCTTTTGAGACCCCCATTGTTCACGGAGTGCTGATTAATGGTCTGATCTCAGCAGTTCTCGGGACGAAGTTACCCGGTAAAGGCTGCGTGTTTCTCTACCAGGAAATACGCTTCCCAGCGCCGCTCTTCATCGGAGAGGAGGTTGTGGCGGAAGCAAAGGTCAAAAAGATCAAAATGTCCTTCGCTTTTATTTCTGTTTCCTGCGCTGCCAAAGACAAAGTAGTCATGGAGGGAGAGGTCATGGTCATGATGCCGCAGAACCAACAACAAGCATGA
>TCONS_00040209
ATGACATTTCTTTTAAGAAGAAGGATTTTCACACTGACGGTTCCTGCATCCTCCACAACAGGGCACAGGTCGCTTTACGTCGGTGAACAGGCCTCGCTAAGCAAAACATTCAGTGCCAGAGACGTTGCACTTTTTGCTGAGCTGACAGGGGACACAAATCCTCTCCATGTCGACCCGGAGTACGCCAAAACCACCTCTTTTGAGACCCCCATTGTTCACGGAGTGCTGATTAATGGTCTGATCTCAGCAGTTCTCGGGACGAAGTTACCCGGTAAAGGCTGCGTGTTTCTCTACCAGGAAATACGCTTCCCAGCGCCGCTCTTCATCGGAGAGGAGGTTGTGGCGGAAGCAAAGGTCAAAAAGATCAAAATGTCCTTCGCTTTTATTTCTGTTTCCTGCGCTGCCAAAGACAAAGTAGTCATGGAGGGAGAGGTCATGGTCATGATGCCGCAGAACCAACAACAAGCATGA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0001731 formation of translation preinitiation complex biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044428 obsolete nuclear part cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0004029 aldehyde dehydrogenase (NAD+) activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-050522-182 Predicted to enable ribonuclease P activity. Predicted to act upstream of or within tRNA processing. Orthologous to human RPP14 (ribonuclease P/MRP subunit p14).

Ensembl:

ensembl_id ENSDARG00000011152

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041885 False 1393 lncRNA 0.41 7 10158463 10164865
TCONS_00040206 False 1134 mRNA 0.44 6 10158502 10164533
TCONS_00040207 False 434 processed_transcript 0.48 5 10159158 10164164
TCONS_00040208 False 504 mRNA 0.48 2 10159512 10164401
TCONS_00040209 True 471 mRNA 0.50 2 10163901 10164401

Neighbor

gene id symbol gene type direction distance location
XLOC_020222 tbc1d20 coding upstream 16994 10129788 ~ 10141469 (+)
XLOC_020221 NA coding upstream 61236 10073420 ~ 10097227 (+)
XLOC_020220 si:ch211-222k6.3 coding upstream 87167 10066846 ~ 10071296 (+)
XLOC_020219 NA coding upstream 109230 10018900 ~ 10049233 (+)
XLOC_020218 BX324216.4 coding upstream 144094 10010292 ~ 10014369 (+)
XLOC_020224 pxk coding downstream 1542 10166407 ~ 10199014 (+)
XLOC_020225 pdhb coding downstream 36961 10201826 ~ 10212502 (+)
XLOC_020226 NA coding downstream 50129 10214994 ~ 10222660 (+)
XLOC_020227 si:dkeyp-87e7.4 coding downstream 67662 10232527 ~ 10262441 (+)
XLOC_020228 NA coding downstream 135538 10300403 ~ 10354336 (+)
XLOC_020216 NA non-coding upstream 166969 9989905 ~ 9991494 (+)
XLOC_020212 NA non-coding upstream 253840 9897971 ~ 9904623 (+)
XLOC_020211 NA non-coding upstream 253965 9886745 ~ 9904498 (+)
XLOC_020240 BX666064.1 non-coding downstream 917911 11082776 ~ 11085979 (+)
XLOC_020241 NA non-coding downstream 925763 11090628 ~ 11098487 (+)
XLOC_020242 NA non-coding downstream 938126 11102991 ~ 11104983 (+)

Expression


Co-expression Network