G102804


Basic Information

Item Value
gene id G102804
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 94408588 ~ 94409643 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU114997
ttcacctctaatcagggcctgatttagacctgggacaccaggtgggtcaTTCCcatctaatcagggcctgatttagacctgggacaccaggtggggtgatattaatgatcagggcctgatttagacctgagacagcaggtgggtgattcccctctctaatcagggcctgatttagacctgggacaccaggtggggtgatattaatgatcagggcctgatttagacctgggacaccaggtggggtgatattaatgatcagggactgatttagacctgggacaccaggtgggtgatataTTCACTATCAGGTAGAGGAGAAAACCAGCAGTggtccggacctcgtagggtttAAGATGATCGGGTA
>TU114999
ttcacctctaatcagggcctgatttagacctgggacaccaggtgggtgattcccctctaatcagggcctgatttagacctgggacaccaggtgggtgattcccctctaatcagggcctgatttagacctgggacaccaggtgggtgattcccctctaatcagggcctgatttagacctgggacaccaggtgggtcaTTCCcatctaatcagggcctgatttagacctgggacaccaggtggggtgatattaacGATCAGgacctgatttagacctgggacaccaggtggggtgatattaatgatcagggactgatttagacctgggacaccaggtgggtgatataTTCACTATCAGGTAGAGGAGAAAACCAGCAGTggtccggacctcgtagggtttAAGATGATCGGGTA
>TU115000
ttcacctctaatcagggcctgatttagacctgggacaccaggtgggtgattcccctctaatcagggcctgatttagacctgggacaccaggtgggtgattcccctctaatcagggcctgatttagacctgggacaccaggtgggtgattcccctctaatcagggcctgatttagacctgggacaccaggtgggtcaTTCCcatctaatcagggcctgatttagacctgggacaccaggtggggtgatattaatgatcagggcctgatttagacctgggacaccaggtggggtgatattaatgatcagggactgatttagacctgggacaccaggtgggtgatataTTCACTATCAGGTAGAGGAGAAAACCAGCAGTggtccggacctcgtagggtttAAGATGATCGGGTA
>TU115003
ttcacctctaatcagggcctgatttagacctgggacaccaggtgggtgattcccctctaatcagggcctgatttagacctgggacaccaggtgggtgattcccctctaatcagggcctgatttagacctgggacaccaggtggggtgatattaatgatcagggcctgatttagacctgggacaccaggtggggtgatattaatgatcagggactgatttagacctgggacaccaggtgggtgatataTTCACTATCAGGTAGAGGAGAAAACCAGCAGTggtccggacctcgtagggtttAAGATGATCGGGTA
>TU115004
agcaggtgggtgattcccctctttaatcagggcctgatttagacctgagacagcaggtgggtgattcccctctctaatcagggcctgatttagacctgggacaccaggtggggtgatattaacgatcagggcctgatttagacctgggacaccaggtgggtgattcccatttctaatcagggactgatttagacctgggacaccaggtgggtgatattaatgatcagggactgatttagacctgggacaccaggtgggtgatataTTCACTATCAGGTAGAGGAGAAAACCAGCAGTggtccggacctcgtagggtttAAGATGATCGGGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114997 False 364 lncRNA 0.44 3 94408588 94409643
TU114999 False 412 lncRNA 0.48 3 94408588 94409643
TU115000 False 412 lncRNA 0.52 2 94408588 94409643
TU115003 False 314 lncRNA 0.51 2 94408588 94409643
TU115004 True 332 lncRNA 0.50 2 94409165 94409643

Neighbor

gene id symbol gene type direction distance location
LOC110533014 LOC106575474 coding upstream 62473 94341947 ~ 94346115 (+)
LOC118936691 LOC106575474 coding upstream 130013 94273861 ~ 94278575 (+)
mmp21 mmp21 coding upstream 319585 94073070 ~ 94089003 (+)
LOC110515885 hem4 coding upstream 340591 94054281 ~ 94067997 (+)
LOC118966112 NA coding upstream 381112 94023910 ~ 94027476 (+)
LOC110514579 LOC106592849 coding downstream 112753 94522396 ~ 94559917 (+)
LOC110519363 LOC105888795 coding downstream 156365 94566008 ~ 94639453 (+)
LOC118966139 NA coding downstream 231578 94641221 ~ 94642172 (+)
LOC110499554 mtr coding downstream 233050 94642693 ~ 94715672 (+)
LOC110511675 ryr2 coding downstream 307512 94717155 ~ 95250071 (+)
G102801 NA non-coding upstream 3038 94404940 ~ 94405550 (+)
G102795 NA non-coding upstream 13940 94394362 ~ 94394648 (+)
G102788 NA non-coding upstream 39257 94369004 ~ 94369331 (+)
G102778 NA non-coding upstream 69283 94337983 ~ 94339305 (+)
G102775 NA non-coding upstream 79998 94327915 ~ 94328590 (+)
G102807 NA non-coding downstream 4868 94414511 ~ 94417290 (+)
G102885 NA non-coding downstream 12793 94422436 ~ 94422727 (+)
G102897 NA non-coding downstream 36047 94445690 ~ 94446652 (+)
G102906 NA non-coding downstream 60346 94469989 ~ 94470513 (+)
G102907 NA non-coding downstream 68678 94478321 ~ 94483080 (+)
G102769 NA other upstream 15273 94314693 ~ 94393315 (+)
G102740 NA other upstream 160657 94245497 ~ 94247931 (+)
G102710 NA other upstream 195680 94211049 ~ 94212908 (+)
G102505 NA other upstream 573396 93833124 ~ 93835192 (+)
LOC110511695 LOC106577385 other upstream 639100 93722388 ~ 93770095 (+)
G102912 NA other downstream 79039 94488682 ~ 94522297 (+)
G102936 NA other downstream 145421 94555064 ~ 94556189 (+)
G103091 NA other downstream 356531 94766174 ~ 94766557 (+)
G103584 NA other downstream 1069146 95478789 ~ 95480329 (+)
G103605 NA other downstream 1154696 95564339 ~ 95565530 (+)

Expression


Co-expression Network