RNA id: TU114999


Basic Information

Item Value
RNA id TU114999
length 412
lncRNA type intronic
GC content 0.48
exon number 3
gene id G102804
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 94408588 ~ 94409643 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcacctctaatcagggcctgatttagacctgggacaccaggtgggtgattcccctctaatcagggcctgatttagacctgggacaccaggtgggtgattcccctctaatcagggcctgatttagacctgggacaccaggtgggtgattcccctctaatcagggcctgatttagacctgggacaccaggtgggtcaTTCCcatctaatcagggcctgatttagacctgggacaccaggtggggtgatattaacGATCAGgacctgatttagacctgggacaccaggtggggtgatattaatgatcagggactgatttagacctgggacaccaggtgggtgatataTTCACTATCAGGTAGAGGAGAAAACCAGCAGTggtccggacctcgtagggtttAAGATGATCGGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114992 lncRNA upstream 3038 94404940 ~ 94405550 (+) True G102801
TU114985 lncRNA upstream 13940 94394362 ~ 94394648 (+) True G102795
TU114978 lncRNA upstream 39257 94369004 ~ 94369331 (+) True G102788
TU114931 lncRNA upstream 43898 94362391 ~ 94364690 (+) False G102759
TU115007 lncRNA downstream 4868 94414511 ~ 94417290 (+) True G102807
TU115150 lncRNA downstream 12793 94422436 ~ 94422727 (+) True G102885
TU115162 lncRNA downstream 36047 94445690 ~ 94446652 (+) True G102897
TU115172 lncRNA downstream 60346 94469989 ~ 94470513 (+) True G102906
TU115174 lncRNA downstream 68678 94478321 ~ 94483080 (+) False G102907
XM_021617149.2 mRNA upstream 62473 94341947 ~ 94346115 (+) False LOC110533014
XM_036988999.1 mRNA upstream 62473 94342868 ~ 94346115 (+) False LOC110533014
XM_036989014.1 mRNA upstream 62474 94342871 ~ 94346114 (+) True LOC110533014
XM_036988986.1 mRNA upstream 130013 94273861 ~ 94278575 (+) False LOC118936691
XM_036988993.1 mRNA upstream 130013 94273861 ~ 94278575 (+) True LOC118936691
XM_036989135.1 mRNA downstream 112753 94522396 ~ 94559917 (+) True LOC110514579
XM_036989146.1 mRNA downstream 156365 94566008 ~ 94639453 (+) True LOC110519363
XR_005053416.1 mRNA downstream 231578 94641221 ~ 94642172 (+) True LOC118966139
XM_036989163.1 mRNA downstream 233050 94642693 ~ 94715672 (+) False LOC110499554
XM_036989175.1 mRNA downstream 233050 94642693 ~ 94715672 (+) False LOC110499554
TU114956 other upstream 15273 94314693 ~ 94393315 (+) True G102769
TU114886 other upstream 160657 94245497 ~ 94247931 (+) False G102740
TU115185 other downstream 79039 94488682 ~ 94522297 (+) True G102912
TU115224 other downstream 145421 94555064 ~ 94556189 (+) False G102936
TU115225 other downstream 145421 94555064 ~ 94556189 (+) False G102936
TU115226 other downstream 145421 94555064 ~ 94556189 (+) False G102936
TU115227 other downstream 145421 94555064 ~ 94556189 (+) True G102936

Expression Profile