RNA id: XM_036989175.1


Basic Information

Item Value
RNA id XM_036989175.1
length 5008
RNA type mRNA
GC content 0.52
exon number 31
gene id LOC110499554
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 94642693 ~ 94715672 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAGCGTAGTTCCGCCTGCGTAGTTGTGCAGCTCCTCCACGCCAGACGGAGGAAAGTGATTTATGGACATTGAGTTGACAAGCGGCCGCCGGCAGGGTCAGTGTTGGTTGCTCTCTTCAGGCACTGTTTGTTCCTTTGCAGTTAAATCAAGcaaaagaagaagaaggagaattCCAACGCCATGGCTCCTACAATATATGAGAGTTCAACAACAAAAGGTAGTGGCCCTAGCAGACCTGCCCTAGAGGCTGAGCTCAGGGAGCTGTTAGGGAAGAGGATCATGATACTAGATGGAGGGATGGGCACCATGATCCAGGAGAGGCGATTGGAGGAGGAACATTTCAGGGGGGAGGAGTTTAAAGACCACACCCACAGCCTGAAGGGCAACAACGACCTGCTGAGCATCACACAGAGTGATGTCATCTACAGCATACACAAGGAATACCTGCTGGCTGGGGCAGACATCATTGAGACCAACACTTTCAGTAGCACCTGTATCGCCCAGGCCGACTACGGACTGGGACACTTGGCTTATCGTATGAACAAGGTGTCAGCAGAAATAGCCAGGAAAGCAGCAGATGACATCACCAACCAGACAGgttgtaagaGATACGTGGCGGGCGCCGTGGGCCCCACCAATAAAACCCTGTCTGTGTCTCCCTCAGTGGAAAGACCAGACTTCAGGAACGTCACCTTTGATGAGCTGGCTGAGGCCTACGCTGAGCAGGTCCGGGGTCTGTTGGATGGAGGAGCGGATATTATCATGGTGGAGACCATCTTTGACACGGCCAACGCCAAGGCAGCACTGTTTGCTATCGACAAACTGTTTGAAGAGAGCTACGAACCCAGACCTATATTTATATCAGGCACCATCGTGGACAGGAGTGGTCGAACTctctcaggacagacaggagaggccTTCGTCATCAGTGTGTCCCATGCCAAACCCCTCTGTATTGGTCTTAACTGTGCCTTAGGAGCCACTGAGATGAGGCCTTTTATTCAGGCTATTGGGAAATGCACCACGGCTCACGTCTTATGCTACCCCAATGCAGGTCTGCCCAATACGTTCGGTGGATACGATGAGACCCCGGAGTTGACAGCCTCACATTTAAAGGACTTTGCTACAGATGGTCTGGTGAATCTGGTTGGTGGATGCTGTGGAACGACTCCTGCACACATCAGggCCATTGCTGAGAAAGTGAAGCACTGCCATCCCAGAGTGCCCCCTACTGACGTCTTTCAGGACTACATGCTACTCGCAGGTCTGGAGCCATTCAGGATCGGTCCGTACACTAATTTCGTCAACATCGGCGAGCGGTGCAACGTGGCTGGATCAAGGAAGTTCGCCAAGCTGATCATGTCGGGAAACTACGAGgaGGCGTTGAGCATAGCCAAGACCCAGGTGGAGATGGGAGCCCAGGTGTTGGACATCAACATGGACGAGGGGATGTTGGAGGGTCCTGCCGCCATGGCCCGGTTCTGCTGTCTCATATCCTCCGAGCCTGACATCGCCAGGgtACCTCTGTGTATAGACTCGTCGAACTTCGAGGTGATCAAGGCGGGGCTGAAGTGTTGTCAGGGGAAGTGTATCGTGAACAGCATCAGTCTgaaggaaggagaagaggagttTCTCCAGAGGGCTACGACTGTCAGACGCTACGGGGCTGCCGTGGTGGTGATGGCCTTCGACGAGGAGGGTCAGGACGGTATGGACATGGGCATAGTGAACGCTGGCAGCCTGCCTGTCTATGATGATATCGACAAGGAGCTCCTGCTCATGTGTGAGAACCTTATCTGGAACAAAGATCCGGAGGCCACAGAGAAACTACTGCTGTATGCACAGAGCTGTGCCAAAGGAGGGAAGAAGGTGGTCCAGACGGATGAGTGGCGAGAGGGAACAGTGGAGGAGAGGCTGGAGTATGGGCTCATCAAGGGTATAGATAAGTATGTGGTAGAGGACACAGAGGAGGCGAGGTCCCAGGCTGAGCTCTATCCGAGGCCCCTACACGTCATCGAGGGGCCCCTGATGAACGGCATGAAGGTGGTGGGAGACCTGTTTGGTGCTGGGAAGATGTTCCTACCTCAGgtgATAAAGTCAGCACGTGTGATGAAGAAGGCTGTCGCCCACCTGATCCCCttcatggagaaggagagagaggccatGCTACTGGCATCAGGATCAGTAGAGGAGATTgACCCCTACCAGGGCACCATAGTGTTGGCCACAGTGAAGGGAGACGTCCACGACATCGGAAAGAACATTGTAGGAGTGGTGCTGGGCTGCAACAACTTCAGAGTGATCGATCTGGGGGTCATGATTCCATGCGACAGGATATTGAGGGAAGCCATCGACTGCAAAGCAGACATCATCGGTCTGTCTGGCCTCATCACGCCCTCGCTGGATGAGATGATCTACGTTGCCAAGGAGATGGAGCGGCTTGGGATGAAGACCCCACTGCTGATCGGAGGGGCCACCACCTCCAAGACCCACACGGCAGTGAAGATCGCTCCCCGTTACAGCTGTCCTGTGGTGCATGTTCTGGATGCTTCCAGGAGTGTGGTGGTGTGTTCCCAGCTGCTAGATGAGAATGTGAAGGAGGAGTTCTTTGAGGAGACGACAGAGGAGTACGAAGACATCAGACAGGACCACTATGACTCTCTAAAGGAGAGGCGCTTCCTGTCTCTAGCCCAGGCCAGGGAGAAAGGACTCCATGTGGATTGGCTTTCTCAGACCAAACCAGTGTGTCCTCAGTTCCTGGGTACCCGTGTGTTTGAGGGGTATGACCTGCGGAGGCTGGTGGACTATATCGACTGGAAGCCTTTCTTTGACGTGTGGCAGCTGAGAGGGAAGTACCCTAACAGAGGGTACCCCAAGATCTTCAAGGACAAAACCGTGGgtgaggaggcTCGGAGGGTGTTTGACGACGCCCAGCGGCTCCTCAacagactgatagataataaggGTCTCTGGGGGCGTGGCCTGGTGGGCTTCTGGCCCGCCCAGAGTGTAGGAGACGACATCCAGGTGTACGAACATGACGTCACACCTCGCTCCACCACGCCCCTCGCCACCTTCTACGGACTACGCCAACAGGCAGAGAAGGACAGTGCCAGCTCAGACCCCTACTACTGCCTGTCCGACTTCGTGGCCCCGAGGGCCAGCTGTGTGTCTGACTACATGGGGATGTTTGCTGTAGCTGTGTTCGGAGCGGAGGAGCTGAGCAAACAGTTTGAGACCCAGGGAGACGACTACAACAGTATCATGGTGAAGGCTCTGGCTGATCGCCTGgctgagGCGTTTGCCGAGGAGCTCCACGCCAGGGTGCGTAGGGAGCTGTGGGGCTACAGCGTGGAGGAGAACCTCCCGACTGAGGACATGCACAGGATCCGTTACGAGGGCATCAGGCCAGCCGCAGGATACCCCTCCCAACCCGACCACACTGAGAAGACCGCCATGTGGACGCTGGGCGAGGTAGAGGAGAAGACGGGTATCAAGTTGACTGAGTCTCTGGCCATGACCCCAGCAGCAGCTGTCTCCGGGCTGTACTTCTCTCACCCTAAAGCTACCTACTTCGCAGTGGGAAAGATCACCAGAGAACAGGTGGAGGACTATGCTGGGAGGAAAGAGATGCCAGTGTCTGAGGTGGAACGCTGGCTGGGACCAATCCTGGGCTACGACACTGACTGACAGTGATACTTCAACCAATCCTGGGCCACGACACTGACTGACAGTGATACTTCAACCAATCCTGGGCTACGACACTGACTGACAGTGATACTTCAACCAATCCTGGGCCACGACACTGACTGACAGTGATACTTCAACCAATCCTGGGCTACGACACTAATGCATCCACAACCACTACCTAGAAAACAGAGGCGCTGCTCAATGGTCAtgtctagatgggatacagcttttgtcaaattgacGTCAAAAATTGACAAATTCTAACCCTTTTCCCAACCTTAACCCAATtctccctaacctgctacgttaattctccctaacctgctacgttaattctccctaacctgctacgttaattctccctaacctgctacgttaattctccctaacctgctacgttagttctccctaacctgctacgttagttctccctaacctgctacgttaattctccctaacctgctacgttaattctccctaacctgctacgttaattctccctaaCCTGCTACTTTAATTCtcccctaacctgctacgttaattctcccaaacctgctacgttaattctccctaacctgctacgttaattctccctaacctgctacgttaattctccctaacctgctacgttaattctcctaacctgctacgttaattctccctaacctgctacgttaattctccctaacctgctacgttaattctccctaacctgctacgttaattctccctaaCCTGCTACTTTAATTCtcccctaacctgctacgttaattctccctaacctgctacgttaattctccctaacctgctacgttagttctccataacctgctacgttagttctccctaacctgctacgttagttctccCAAACCTGCTACCTTAATTTTCCCaaacctgctacgttagttctccCAAACCTGCTACCTTAATTCTCCCAAACCTGCTACCTTAATTCTCCCagacctgctacgttaattctccctgacctgctacgttaattctccctgacctgctacgttaattctccctgacctgctacgttaattatccctgacctgctacgttaattctccctgacctgctacgttaattctccctgacctgctacgttaattctccctgACCTGCTACGTTCATtctccctaacctgctacgttaattctcccaaACCTTCTACGTTAGTTCTCCCAAACCTGCTACTTTAGTTCTCCCAAACCTGCTACCTTAATTCTCCCAAACCTGCTACCTTAATTCTCCcaaacctgctacgttaattctcccaaacctgctacgttaattctccctaacctgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115328 lncRNA upstream 5365 94636540 ~ 94637328 (+) False G103008
TU115329 lncRNA upstream 5365 94636540 ~ 94637328 (+) True G103008
TU115327 lncRNA upstream 8343 94632824 ~ 94634350 (+) True G103007
TU115310 lncRNA upstream 54859 94584472 ~ 94587834 (+) True G102991
TU115307 lncRNA upstream 57109 94582591 ~ 94585584 (+) True G102988
TU115419 lncRNA downstream 10740 94726412 ~ 94726676 (+) True G103070
TU115426 lncRNA downstream 22368 94738040 ~ 94741256 (+) True G103076
TU115461 lncRNA downstream 69569 94785241 ~ 94785682 (+) True G103098
TU115476 lncRNA downstream 104329 94820001 ~ 94839459 (+) False G103107
TU115472 lncRNA downstream 105090 94820762 ~ 94823406 (+) False G103107
XR_005053416.1 mRNA upstream 521 94641221 ~ 94642172 (+) True LOC118966139
XM_036989146.1 mRNA upstream 3240 94566008 ~ 94639453 (+) True LOC110519363
XM_036989135.1 mRNA upstream 82776 94522396 ~ 94559917 (+) True LOC110514579
XM_036988999.1 mRNA upstream 296578 94342868 ~ 94346115 (+) False LOC110533014
XM_036989200.1 mRNA downstream 1483 94717155 ~ 95250071 (+) True LOC110511675
XR_005053418.1 mRNA downstream 385323 95100995 ~ 95101738 (+) True LOC118966140
XM_036989216.1 mRNA downstream 759107 95474779 ~ 95478784 (+) True LOC118966142
XM_036990109.1 mRNA downstream 770006 95485678 ~ 95619013 (+) True LOC110516878
TU115224 other upstream 86504 94555064 ~ 94556189 (+) False G102936
TU115225 other upstream 86504 94555064 ~ 94556189 (+) False G102936
TU115226 other upstream 86504 94555064 ~ 94556189 (+) False G102936
TU115227 other upstream 86504 94555064 ~ 94556189 (+) True G102936
TU115185 other upstream 120396 94488682 ~ 94522297 (+) True G102912
TU115442 other downstream 50502 94766174 ~ 94766557 (+) True G103091
TU116143 other downstream 763117 95478789 ~ 95480329 (+) True G103584
TU116174 other downstream 848667 95564339 ~ 95565530 (+) True G103605
TU116208 other downstream 976315 95691987 ~ 95694076 (+) True G103633

Expression Profile