RNA id: TU115426


Basic Information

Item Value
RNA id TU115426
length 260
lncRNA type intronic
GC content 0.45
exon number 2
gene id G103076
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 94738040 ~ 94741256 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctactgttggtgagctgtagtgtagtgaatgactccctactgttggtgagctgtagtgtagtgaaagactccctactgttggtgagctgtagtgtatgttggtgagctgtagtgtaaagactccctactgttggtgagctgtagtgtactgaaagattccctactgttggtgagctgtattgtagtgaaagactccctactgttggtgagctgtagtgttctgaaagattccctactgttggtgagctgtagtgtatgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115419 lncRNA upstream 11364 94726412 ~ 94726676 (+) True G103070
TU115413 lncRNA upstream 25119 94712348 ~ 94712921 (+) True G103064
TU115407 lncRNA upstream 81060 94656217 ~ 94656980 (+) True G103060
TU115403 lncRNA upstream 93210 94644524 ~ 94644830 (+) True G103057
TU115328 lncRNA upstream 100712 94636540 ~ 94637328 (+) False G103008
TU115461 lncRNA downstream 43985 94785241 ~ 94785682 (+) True G103098
TU115476 lncRNA downstream 78745 94820001 ~ 94839459 (+) False G103107
TU115472 lncRNA downstream 79506 94820762 ~ 94823406 (+) False G103107
TU115474 lncRNA downstream 80825 94822081 ~ 94840803 (+) True G103107
TU115484 lncRNA downstream 89563 94830819 ~ 94842965 (+) False G103111
XM_036989163.1 mRNA upstream 22368 94642693 ~ 94715672 (+) False LOC110499554
XR_005053418.1 mRNA downstream 359739 95100995 ~ 95101738 (+) True LOC118966140
XM_036989216.1 mRNA downstream 733523 95474779 ~ 95478784 (+) True LOC118966142
XM_036990109.1 mRNA downstream 744422 95485678 ~ 95619013 (+) True LOC110516878
TU115224 other upstream 181851 94555064 ~ 94556189 (+) False G102936
TU115225 other upstream 181851 94555064 ~ 94556189 (+) False G102936
TU115226 other upstream 181851 94555064 ~ 94556189 (+) False G102936
TU115227 other upstream 181851 94555064 ~ 94556189 (+) True G102936
TU115185 other upstream 215743 94488682 ~ 94522297 (+) True G102912
TU115442 other downstream 24918 94766174 ~ 94766557 (+) True G103091
TU116143 other downstream 737533 95478789 ~ 95480329 (+) True G103584
TU116174 other downstream 823083 95564339 ~ 95565530 (+) True G103605
TU116208 other downstream 950731 95691987 ~ 95694076 (+) True G103633

Expression Profile