RNA id: XM_036990109.1


Basic Information

Item Value
RNA id XM_036990109.1
length 5771
RNA type mRNA
GC content 0.57
exon number 18
gene id LOC110516878
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 95485678 ~ 95619013 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGACTATGTGATCACGGGAAAATCAAAACGTCACTCAAGGAATTCACACCTGTAAGAAATGAAATGGCTGATTGAATGGGCGCGTCTTTCCAAAGGACTATGTGGTGGCTGCATGCTGGCGGTGAACGTTAACTTCACGGAGGCAACATGATACACCCTCACTGGGAGAACTGTCCCCAGCATCAAGACTTCACCATGCGCACCATCCAGACTATAGAAAACCACATCCCTGTGCTGAGGGAGAGCATTGTCAGGACTCCTTTCACAGGGAGAACTGTGTGCCTGTTCAATatgaatacaaacagacacaaTCCCCATCAGACTCCCCGTCACAGCCCCTATAACAGCCACACTCCCCGTCACAGCCCCTATAACAGCCACACTCCCCGTCAGACTCCCTGTCACAGCCCCTATAATGGCAACACTCCCAGCCGCACTCCCCTTCACAGCCCCTGCCGCAGCCAGACTCCCTGCCGCAGCCCCTATAACAGACACACTCTCCGCTATAGTCCTTATAACACCCGTTCTCCCCGCCAGACTCTCTGTCACAGCGGCCACCTCTCCCTAGAGCCCAGCCAGTACCCAACTCCCCAGCCATGGTTTTCTCTACCCCTGGCGAGGAGGCAGCCTGCGGAGAGGCAGCCGGCGGAGACCTCTTCTACTGTTGTTTCTGAAAGCTatttctcttcctccatccctgctAGGCTCAGCACATTATGCAGAGCagcagatggagaggaggagagtgagacgggagagagagagcaggtgcaCGCGCATGGAAAGAGGCTGCAGGGAGGAGGGGGAAAAGGGAAGCAGCGAGAAAtcgagcagggaggagggggagaagagaagcaGCGAGATATCGCACTGgcgcagggaggaggagagcgagagcaggCGTACGTCGTCTtcgcatcatcatcatcatcagcactgCTTCTCTCATCATCGTCACGGGAAAGCAGCATCACAGCCTCGCAGCAGCTACGCAGACGTAGACGGAGGAGCAGCAGAGAAAATGGCAGCTGTTTTCAAAGACATGGCCTGAGTCTCGGCACCAGACAGAAGTGGAGGCTGAGATTCAGCATCATGGGGAACCAGGAGGGGAAGCAGAagaaggggaaagagggggaCGGATACGGACAGGACGCAGCAGAACATACCACCGGGGAGCCCCGTCACACTGACGGCACAAACAAAGGATTTCACCACGGCAAGAAATCCCACGGAAAACATggcaaaggaggaggagaggagaagaagaataagaAGGAGTCTAAATCCTCTGTGTTCTCTATCAGGAAGAGGAAGAATCTAAAGGGGAAGGGATCGACAGGGGGATCCAGGGAGGATGTGTTGTCGTCTCAGAATGAGCTGGACTCCGCTCACTCTGCTCACACCAAAACACCagatctctctctgtcagctgACGAGCTGGGCCAATCTGACACCGAGGGACCAGCAGAGCCTGGTGATGGGCATGGTGCTAGGAGTCATGGTTGTATCACGGGGGAGAGCCGTCAGCCCACGGGGGAGAGCCGTCAGCCTCAGCCCACGGGGGCGACCGCGGACACTGCTCCAGACCAGCAGGGGGTGGTTGAACAGAGAAAGAGGAGCAGCTCTGGTTCAGACCCGGACATCTATAGCTTTCACTCAGCTGCAGAACAAGAGGACCTGCTAGCCGACATCCAGCAGGCTATTAGACTACAGCAGGGGGTGATTATCTCCACCGCTGAGCTGAGTGAAGAGCTGGgttggggaggagggtggaggaaacAGAGGTCTGACGAGGTTATAACTACCCCCAGTCCCACTGAACAAACCAAATCCCCACCGGAGCCTCTCTCTGCCCCAGAGACAGCCCCCGTCACTGGCCGGGAGAATGGCCTGCTTTctaaactgtctctgtctctggatggggaggaggaggaggaggcggtggaggaggagaggggagctacCACTGCTACAGAGGAACTCAACTGGGAGCTGAGAGGGGCTGAAACAGAACCAGCTCTTTGtgcctcctcctctttctctgggacaaaggagcaggaggaggagcaggccGAGGAGGCATTGAGCTGCCAAGAGGTTAACGGTAACACTCAGCCCCTCTCTCAGCCCCCCACTGCCCAGACGAACGGCCATGTTACCAAGACAACCAGCGCTACCAGCTTCCCAGACCTCACAGCCTCCTTTGAGAGCGCTGTGGAGTCTCCTctcagagaggagaaggaggtgttggaggaggtggaggaaggggaggaggaggaggagaatgaccTGGACATGCCTCCCCTGTCAGCCGAGAGCCTTAGTCACAGTGATGCGACCACGAGCCACGAGGACATAGACCTGAGCTCTGGCAATGCCTctgaggaagaggggagggtgggggacTGGGTGGGGGCAGGGGTGGGGGCTGCAGTCAGCGTTGAGTCCCTGGAGTGTCTTAGCAGGGGTGATCTGGGGTGCTCTGAGCCTGCCGACGACCCTCTGATCACCCAGAGAAGGAAGAGCAGCGTGTCCTTCTCCCCTTGGCCCTCTCAGGAGAGCCCTAGCCTGGCCATGCGTCTCCTCAAGTCCACCCTGACCTCCACCCTTCCatcctacaaccactcttcctcAGGCACCAGCCCCACAGTCAAACCCTACCCTCCCATTTACCCTTCTTACATCAAGACCACCACCAGGCAACTCTCTGGCTCCCCAGGCACCTCGCCCTCACGGAGCCCCTTGTTCCGCCAGCGCTGCCACGACCTGGGACACCGCACGGAGAAGTGGAGGGTTAGACGACAGCGCTCCCACAGCATCGCCGGTCCCCTCAGCTGGTCCGCGGACTGGACCGAGGAGCTGGACAGGGAGCGCCCCATCAAGACAGGATCAGCAGACTACCTGGAGGGGTACGGAGGGTCGGAGGACAGGCTGAGGGGGGGCAGTCAGCCCCTGTGTGCCACACGGAGATCCTCCGCCGGACACGTGTCTACCTGTAGCTTCCACGACATCTTCACCGgtCGTACTCTCCTAGAGAAGTTGTTCCTGCAACAGGAAGATGCCCAGCCAGAGGAAGCTGAGAAGCTGTGTTCTCGGATTCTGGCCATGGGTCTGTTGCTACCCTTCACTGACTGCTTCAGAGACACAATAGGAGGGTCCAACCCACAACTCGCTGCGCCATGCAAGTTCCACcaaGACCAGCTGTACACGTGGGCAGCGGTCAGCCAGCCCCCCCACTCCATGGAACACTTTGAGGGCCGGGCCCCCCTCCCTGGGCACCTGAAGACCCTGTGGCCCCCACCCAGACCTGTGGGAGACGATAGACCAGGCCTCATGTACACCGAGGAGGAGGGCGATGAAGAACACCAGGCAGCCATCTTGGGGCTGAAGAGACATCAGAGGGAAGAAGTCGGCCAACTTCAGgaGGAGTCAGTGCTGAAAACAGTGAAGCTGAAAGAGGAGCACGTCAATGTGATCCAGCAGTTAGAACAGACCATTGAGGACCTGCGGACTAAGATAGCTGAGCTGGAGGAACAGCACCCCCTGCTGGACAGAGATATTATTAGTATGGAGCCGGAGGCTGGTGTGGAGGGGGATCTGTACCGGGAGGTCTGTCATGTAGACCtacagactgaggagaggatagtGAAGGAGGTCTGTCATGTAGACCTACAGACTGAAGAGAGGATGGTGAAGGAGGTCTGTCATGTAGACCAGCAGACTGACTGTCTCCTGAGTTGTCTGGAGGCCAAGTCTGTCCAGACGTCGCCTATGGAGGAAAGCTATAAGTTTAAAGTGCCTTTACCGGACCAGATGCCACCCTTGTTTGTGAACGAGGCTGGAGGAGAGTCCTCTTTGTCTTCCTCCTGTTCCCTGAAACTCCCCCCAGAACTGGCCCTGTCCCTACCCATACCCTTCTCCCCCAAGGTTGCACCAGCATTTGTCTGTACGTGCCAACAGCAGCAGAGTGGCATTAaaccccccccaccacctcctTTACCTGGTCACTCCAtggctcctcctccaccaccacctctaccagggGGTGCAATGcccccaccacctcctccacctcctctaccaGGGGGTGCAAtgcctccaccacctcctccacctcctctaccaGGGGGTGCAatgcctccaccaccacctccacctcctctaccaGGGGGTGCAAtgcctccaccacctcctccacctcctctaccaGGGAGTGCAATGcccccaccacctcctccacctcctctaccaGGGGGTGCAATGcccccaccacctcctccacctcctctaccaGGGGGTGCAATGCCcccaccaccccctcctctccctggcATGGGGATGgcacctccaccccctcccttaCCTGGGATGATAGGGATgggccctcccccaccccctccaccATTACCTGGGATGggtggacctcctcctcctcctcctcctcctggctgTGGCCCTCCTCCACCATGTGCCCTGGGCTCCCTGGTCCCTCCGATGCCCATGGGACTGTATGCTCTAGGCATGGCCCAGGAGAAACCTCCCCGGAAAGGAGTGGTGGAGCCCCCCAGACCCATGAAACCTCTCTACTGGACCAGGATACAGCTCAACTCAGCTCAACACAAAaaAGAGGTGAGCACGTCGCTGGTCTGGGACAAGATACAGGAGCCTGATGTGAACTTTGAGGAGTTCGTAGAGCTGTTCTCCAAGACTGCtgtgaaggagaagaagaaacCCCTGTCAGATACCATCACCAAGTCTAAAGCCAAACAGgtGGTCAAATTGCTGAACAACAAGCGTTCTCAGGCGGTGGGGATTCTGATGTCCAGTCTGCATCTGGACATGAAGGACATCCAGCATGCCATCCTGAACCTGGACAATACTGTGGTGGATCTGGAGACTCTACAAGCCCTCTATGAAAACAGAGCACAACAGGATGAGATGGAGAAAATCGATAAGCACATCAAGTCATCTAAAGACAAGGACAACGCCAAACCACTGGACAAACCTGAACAGTTCCTGTTCCAGTTACATCAGATCCCCAACTTCTCAGGCCGGGTGTTCTGTATCCTGTTTCAGTCCACCTTCTCTGAATGGATCTCCTCTATCCTGCGCAAACTGGACATCCTGCAGAGAGTGTGCACGACCTTGCAGAGTGGCCAGTGTGTGATGCAGGTGCTGGGTCTGGTCCTGGCCTTTGGTAACTTCATGAATGGTGGCAACCGAACCAGAGGACAGGCTGACGGCTTTAACCTGGATATCCTGCCCAAGCTGAAGGATGTGAAGAGCAGTGATAACACACGGAGCCTGTTGTCCTACATAGTGGCTTACTATCTGAGGCACTTTGACCAGGACGCCGGCAGGGAGACGtgcctctaccctctccctgAGCCCCAGGATCTGTTCCAGGCTTCACAGATGAAGTTTGAGGACTTTCAGAAGGACCTGACCAGGCTGAAGAAGGACCTTCGAGTGTGCAACACAGAGGTGGAGAAGGTGTGTCAAGTGTCATCTGAAGATCACCTGCAGCCCTTCAAGGACAAGATGGAGGAATTCCTCAGCCAAGCTAAATCTGAACTGGAGGTCCAGGAGACGCAGCTCAGTGACACTCACAAGTTgttCCTGGAGTTGACGGTGTTCTACCAGGTGAAGGCTAAGATGGGTGAGAAGGAGGTTTCCCCCCACACCTTCTTCTCCGTGTGGCACGACTTCTCCTCCGACTTTAAAGACCTGTGGAAGAAGGAGAACAAGATGATCCTACAGGAAAGGTAG

Function

GO: NA

KEGG:

id description
K02184 FMN2; formin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116147 lncRNA upstream 2125 95481768 ~ 95483553 (+) False G103587
TU116146 lncRNA upstream 2125 95482234 ~ 95483553 (+) True G103587
TU116109 lncRNA upstream 96634 95387841 ~ 95389044 (+) True G103556
TU116090 lncRNA upstream 101413 95347246 ~ 95384265 (+) True G103544
TU116076 lncRNA upstream 155299 95330037 ~ 95330379 (+) True G103533
TU116198 lncRNA downstream 59365 95678378 ~ 95680605 (+) True G103626
TU116204 lncRNA downstream 70377 95689390 ~ 95690441 (+) True G103630
TU116207 lncRNA downstream 71450 95690463 ~ 95690686 (+) True G103632
TU116377 lncRNA downstream 101251 95720264 ~ 95720696 (+) True G103758
XM_036989216.1 mRNA upstream 6894 95474779 ~ 95478784 (+) True LOC118966142
XM_036989200.1 mRNA upstream 235607 94717155 ~ 95250071 (+) True LOC110511675
XR_005053418.1 mRNA upstream 383940 95100995 ~ 95101738 (+) True LOC118966140
XM_036989175.1 mRNA upstream 770006 94642693 ~ 94715672 (+) False LOC110499554
TU116143 other upstream 5349 95478789 ~ 95480329 (+) True G103584
TU115442 other upstream 719121 94766174 ~ 94766557 (+) True G103091
TU115224 other upstream 929489 94555064 ~ 94556189 (+) False G102936
TU116208 other downstream 72974 95691987 ~ 95694076 (+) True G103633

Expression Profile