RNA id: TU116146


Basic Information

Item Value
RNA id TU116146
length 428
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G103587
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 95481768 ~ 95483553 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACACAATGAGGacacacaatgagttgaccaggatacacaatgagttgaccaggacacacaatgaggacacacaatgagttgaccacgatacacaatgagttgaccaggacacacaatgagttgaccaggacacacaatgagttgaccaggatacacaatgagttgaccaggacacacgatgagttgaccaggacacacaatgagttgaccaggacaCACGATGAGTTGACCACGATACACAATGAGGacacacaatgagttgaccaggacacacaatgaggacacacaatgagttgaccacgatacacaatgagttgaccaggacacacaatgagttgaccaggatacacaatgagttgaccaggacacacaatgagttaaccaggacacacaatgagttgaccaggacacacaatgagttgacca

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116109 lncRNA upstream 93190 95387841 ~ 95389044 (+) True G103556
TU116090 lncRNA upstream 97969 95347246 ~ 95384265 (+) True G103544
TU116076 lncRNA upstream 151855 95330037 ~ 95330379 (+) True G103533
TU115625 lncRNA upstream 224125 95254777 ~ 95258109 (+) False G103225
TU116162 lncRNA downstream 28332 95511885 ~ 95512200 (+) True G103596
TU116168 lncRNA downstream 42651 95526204 ~ 95526697 (+) False G103602
TU116169 lncRNA downstream 42651 95526204 ~ 95526697 (+) True G103602
TU116171 lncRNA downstream 50408 95533961 ~ 95534349 (+) True G103603
TU116198 lncRNA downstream 194825 95678378 ~ 95680605 (+) True G103626
XM_036989216.1 mRNA upstream 3450 95474779 ~ 95478784 (+) True LOC118966142
XM_036989200.1 mRNA upstream 232163 94717155 ~ 95250071 (+) True LOC110511675
XR_005053418.1 mRNA upstream 380496 95100995 ~ 95101738 (+) True LOC118966140
XM_036989191.1 mRNA upstream 766562 94646559 ~ 94715672 (+) False LOC110499554
XM_036990109.1 mRNA downstream 2125 95485678 ~ 95619013 (+) True LOC110516878
TU116143 other upstream 1905 95478789 ~ 95480329 (+) True G103584
TU115442 other upstream 715677 94766174 ~ 94766557 (+) True G103091
TU115225 other upstream 926045 94555064 ~ 94556189 (+) False G102936
TU116174 other downstream 80786 95564339 ~ 95565530 (+) True G103605
TU116208 other downstream 208434 95691987 ~ 95694076 (+) True G103633

Expression Profile