RNA id: TU116168


Basic Information

Item Value
RNA id TU116168
length 414
lncRNA type intronic
GC content 0.39
exon number 2
gene id G103602
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 95526204 ~ 95526697 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcagtaggagtggtgatctaggatcaggtcatagtctcagtaggagtggtgatctaggatcaggtcataaagagtctcagtaggagtggtgatctaggatcaggtcatagtctcagtaggagtggtgatctaggatcaggtcataaagagtctcagtaggagtggtgatctaggatcaggtcatagtctcaggagtggtgatctaggatcaggtcatagtctcaggagtggtgatctaggatcaggtcatagtctcaggagtggtgatctaggatcaggtcatagtctcagtaggagtggtgatctaggatcaggtcatagtctcagtaggagtggtgatctaggatcaggtcataaagagtctcagtaggagtggtgatctaggatcaggtcataaagagtctcagtaggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116162 lncRNA upstream 14004 95511885 ~ 95512200 (+) True G103596
TU116147 lncRNA upstream 42651 95481768 ~ 95483553 (+) False G103587
TU116146 lncRNA upstream 42651 95482234 ~ 95483553 (+) True G103587
TU116109 lncRNA upstream 137160 95387841 ~ 95389044 (+) True G103556
TU116090 lncRNA upstream 141939 95347246 ~ 95384265 (+) True G103544
TU116171 lncRNA downstream 7264 95533961 ~ 95534349 (+) True G103603
TU116198 lncRNA downstream 151681 95678378 ~ 95680605 (+) True G103626
TU116204 lncRNA downstream 162693 95689390 ~ 95690441 (+) True G103630
TU116207 lncRNA downstream 163766 95690463 ~ 95690686 (+) True G103632
TU116377 lncRNA downstream 193567 95720264 ~ 95720696 (+) True G103758
XM_036989216.1 mRNA upstream 47420 95474779 ~ 95478784 (+) True LOC118966142
XM_036989200.1 mRNA upstream 276133 94717155 ~ 95250071 (+) True LOC110511675
XR_005053418.1 mRNA upstream 424466 95100995 ~ 95101738 (+) True LOC118966140
XM_036989191.1 mRNA upstream 810532 94646559 ~ 94715672 (+) False LOC110499554
TU116143 other upstream 45875 95478789 ~ 95480329 (+) True G103584
TU115442 other upstream 759647 94766174 ~ 94766557 (+) True G103091
TU115225 other upstream 970015 94555064 ~ 94556189 (+) False G102936
TU116174 other downstream 37642 95564339 ~ 95565530 (+) True G103605
TU116208 other downstream 165290 95691987 ~ 95694076 (+) True G103633

Expression Profile