RNA id: TU116198


Basic Information

Item Value
RNA id TU116198
length 289
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G103626
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 95678378 ~ 95680605 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatacagggtattacggtacagagtcaatgtggaggctatatacagggtgttacggtacagagtcaatgtggaggctatatacagtgggtactggtacagagtcaatgtggaggctatacacagggggtaccagtacagagtcaatgtggaggctatatacagggggtaccggtacagattcaatgtggaggctatatacagggggtaccggtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatgtggagactatatacagggggtacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116171 lncRNA upstream 144029 95533961 ~ 95534349 (+) True G103603
TU116168 lncRNA upstream 151681 95526204 ~ 95526697 (+) False G103602
TU116169 lncRNA upstream 151681 95526204 ~ 95526697 (+) True G103602
TU116162 lncRNA upstream 166178 95511885 ~ 95512200 (+) True G103596
TU116147 lncRNA upstream 194825 95481768 ~ 95483553 (+) False G103587
TU116204 lncRNA downstream 8785 95689390 ~ 95690441 (+) True G103630
TU116207 lncRNA downstream 9858 95690463 ~ 95690686 (+) True G103632
TU116377 lncRNA downstream 39659 95720264 ~ 95720696 (+) True G103758
XM_036990109.1 mRNA upstream 59365 95485678 ~ 95619013 (+) True LOC110516878
XM_036989216.1 mRNA upstream 199594 95474779 ~ 95478784 (+) True LOC118966142
XM_036989200.1 mRNA upstream 428307 94717155 ~ 95250071 (+) True LOC110511675
XR_005053418.1 mRNA upstream 576640 95100995 ~ 95101738 (+) True LOC118966140
XM_036989191.1 mRNA upstream 962706 94646559 ~ 94715672 (+) False LOC110499554
TU116174 other upstream 112848 95564339 ~ 95565530 (+) True G103605
TU116143 other upstream 198049 95478789 ~ 95480329 (+) True G103584
TU115442 other upstream 911821 94766174 ~ 94766557 (+) True G103091
TU115225 other upstream 1122189 94555064 ~ 94556189 (+) False G102936
TU116208 other downstream 11382 95691987 ~ 95694076 (+) True G103633

Expression Profile