RNA id: TU116143


Basic Information

Item Value
RNA id TU116143
length 957
RNA type TUCP
GC content 0.50
exon number 3
gene id G103584
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 95478789 ~ 95480329 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTGGGTCAGCTGTATAAGGGCTCTGTCAGGCCTCTCTGGGATGATTTATATTAACAGGACAGTTGGTCAGGGAGATGGACTGTACTTACGAGCCTTTCTCAACGATGAAGAGATcacataataatacaataatacaatGGAAAATAGCAACACgacaaataaaatacacaatTATTTTCAATTCAACTCTGCATCTCTTTCAACTATTGACTTTTTCCCCCCACAGCTGGCACCAGTTTGGCGCCAAAACACTGACAACAAAGACATATTCAACATAGTAAAATCATTAAAAACTGTCTAAAAAAAAAACCACAGGACACTTCATGCTGAATCCCTCATATTTAACAGCAATGGTGTTCACCAACTTGGTGGTTTATATTTAGAATTATGTTTTACAGCTTCGTCATTCTATGTTTATTTTCAAATCATATATGTTGCATGTGAACAGGCCACacagatgaccagggatgtttatacacggagggaaggggagatttgattcgatttgatttgatgttccaacCCAATGGAATGGGACATATAAAAGGGCTGTCAGATGTATGTACAATATCTGTTGGTGTTTCCAAGCCTGGTTTTAACTGAACTGTTGCTGTACGGTTACAGACCTTCAACAATCCTACAGAACACGGTTACAGACCTTCAACAATCCTACAGAACACGGTTACAGACCTTCAACAATCCTACAGAACACGGTTACAGACCTTCAACAATCCTACAGAACACGGTTACAGACCTTCAACAGTCCTACAGAACACGGTTACAGACCTTCAACAATCCTACAGAACACGGTTACAGACCTTCAACAATCCTACAGAACACGGTTGCCTTTCCAGTTGGCAGATAGATGCAATTAGGTGAATCAGTGGACATGTAAAGTTGCAGTACTTTGTAAAGGTGCAGTACTTTGTAAAGGTGCAGTACTTAGTAAAGGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116109 lncRNA upstream 89745 95387841 ~ 95389044 (+) True G103556
TU116090 lncRNA upstream 94524 95347246 ~ 95384265 (+) True G103544
TU116076 lncRNA upstream 148410 95330037 ~ 95330379 (+) True G103533
TU115625 lncRNA upstream 220680 95254777 ~ 95258109 (+) False G103225
TU115626 lncRNA upstream 220680 95256194 ~ 95258109 (+) True G103225
TU116147 lncRNA downstream 1439 95481768 ~ 95483553 (+) False G103587
TU116146 lncRNA downstream 1905 95482234 ~ 95483553 (+) True G103587
TU116162 lncRNA downstream 31556 95511885 ~ 95512200 (+) True G103596
TU116168 lncRNA downstream 45875 95526204 ~ 95526697 (+) False G103602
TU116169 lncRNA downstream 45875 95526204 ~ 95526697 (+) True G103602
XM_036989216.1 mRNA upstream 5 95474779 ~ 95478784 (+) True LOC118966142
XM_036989200.1 mRNA upstream 228718 94717155 ~ 95250071 (+) True LOC110511675
XR_005053418.1 mRNA upstream 377051 95100995 ~ 95101738 (+) True LOC118966140
XM_036989163.1 mRNA upstream 763117 94642693 ~ 94715672 (+) False LOC110499554
XM_036990109.1 mRNA downstream 5349 95485678 ~ 95619013 (+) True LOC110516878
TU115442 other upstream 712232 94766174 ~ 94766557 (+) True G103091
TU115224 other upstream 922600 94555064 ~ 94556189 (+) False G102936
TU115225 other upstream 922600 94555064 ~ 94556189 (+) False G102936
TU115226 other upstream 922600 94555064 ~ 94556189 (+) False G102936
TU115227 other upstream 922600 94555064 ~ 94556189 (+) True G102936
TU116174 other downstream 84010 95564339 ~ 95565530 (+) True G103605
TU116208 other downstream 211658 95691987 ~ 95694076 (+) True G103633

Expression Profile