RNA id: TU115310


Basic Information

Item Value
RNA id TU115310
length 423
lncRNA type intronic
GC content 0.37
exon number 2
gene id G102991
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 94584472 ~ 94587834 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctatttcaccacagctgaaagtacattatagatctatttcCCCACAGCTGAAAGtgtatctatttcaccacagctgaaggtatgttatagatctatttcaccacagctgaaggtacattatagatctatttcaccacagctgaaggtacattatagatctatttcaccacagctgaaggtacattatagatctatttcaccacagctgaaggtacattatagatctatttcaccacagctgaaggtatgttatagatctatttcaccacagctgaaggtatgttatagatctatttcaccacatctgaaggtatgttatagatctatttcaccacagctgaaggtacgttatagatctatttcaccacagctgaaggtacgttatagatctatttcaccacagctgaaggtatgttatagatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115318 lncRNA upstream 5882 94577244 ~ 94578590 (+) True G102999
TU115228 lncRNA upstream 28029 94555420 ~ 94556443 (+) True G102937
TU115217 lncRNA upstream 37176 94539073 ~ 94547296 (+) False G102933
TU115327 lncRNA downstream 44990 94632824 ~ 94634350 (+) True G103007
TU115328 lncRNA downstream 48706 94636540 ~ 94637328 (+) False G103008
TU115329 lncRNA downstream 48706 94636540 ~ 94637328 (+) True G103008
TU115403 lncRNA downstream 56690 94644524 ~ 94644830 (+) True G103057
TU115407 lncRNA downstream 68383 94656217 ~ 94656980 (+) True G103060
XM_036989135.1 mRNA upstream 24555 94522396 ~ 94559917 (+) True LOC110514579
XM_021617149.2 mRNA upstream 238357 94341947 ~ 94346115 (+) False LOC110533014
XM_036988999.1 mRNA upstream 238357 94342868 ~ 94346115 (+) False LOC110533014
XM_036989014.1 mRNA upstream 238358 94342871 ~ 94346114 (+) True LOC110533014
XM_036988993.1 mRNA upstream 305897 94273861 ~ 94278575 (+) True LOC118936691
XR_005053416.1 mRNA downstream 53387 94641221 ~ 94642172 (+) True LOC118966139
XM_036989163.1 mRNA downstream 54859 94642693 ~ 94715672 (+) False LOC110499554
XM_036989175.1 mRNA downstream 54859 94642693 ~ 94715672 (+) False LOC110499554
XM_036989168.1 mRNA downstream 54994 94642828 ~ 94715672 (+) False LOC110499554
XM_036989191.1 mRNA downstream 58725 94646559 ~ 94715672 (+) False LOC110499554
TU115224 other upstream 28283 94555064 ~ 94556189 (+) False G102936
TU115225 other upstream 28283 94555064 ~ 94556189 (+) False G102936
TU115226 other upstream 28283 94555064 ~ 94556189 (+) False G102936
TU115227 other upstream 28283 94555064 ~ 94556189 (+) True G102936
TU115185 other upstream 62175 94488682 ~ 94522297 (+) True G102912
TU115442 other downstream 178340 94766174 ~ 94766557 (+) True G103091
TU116143 other downstream 890955 95478789 ~ 95480329 (+) True G103584
TU116174 other downstream 976505 95564339 ~ 95565530 (+) True G103605
TU116208 other downstream 1104153 95691987 ~ 95694076 (+) True G103633

Expression Profile