RNA id: TU114992


Basic Information

Item Value
RNA id TU114992
length 206
lncRNA type intronic
GC content 0.31
exon number 3
gene id G102801
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 94404940 ~ 94405550 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACAGCCTCAGACGGTACTAGCTGGCTAGGTTACAATGATTAGTCTGCTAGGCGTTAGGGTCCTGGCTAGGTTACAATGATTAGTCTGCTAGGTGTTAGGGTCCTGTCTAGGTTACAATGATTAGTCTGCTAGGTGTTAGGGTCCTGTCTAGGTTACAATGATTAGTCTGCTAGGTGTTAGGGTCCTGTCTAGGTTACAATGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114985 lncRNA upstream 10292 94394362 ~ 94394648 (+) True G102795
TU114950 lncRNA upstream 23093 94305275 ~ 94381847 (+) True G102767
TU114978 lncRNA upstream 35609 94369004 ~ 94369331 (+) True G102788
TU114937 lncRNA upstream 40250 94282061 ~ 94364690 (+) False G102759
TU114941 lncRNA upstream 40250 94282061 ~ 94364690 (+) False G102759
TU114997 lncRNA downstream 3038 94408588 ~ 94409643 (+) False G102804
TU114999 lncRNA downstream 3038 94408588 ~ 94409643 (+) False G102804
TU115000 lncRNA downstream 3038 94408588 ~ 94409643 (+) False G102804
TU115003 lncRNA downstream 3038 94408588 ~ 94409643 (+) False G102804
TU115004 lncRNA downstream 3615 94409165 ~ 94409643 (+) True G102804
XM_021617149.2 mRNA upstream 58825 94341947 ~ 94346115 (+) False LOC110533014
XM_036988999.1 mRNA upstream 58825 94342868 ~ 94346115 (+) False LOC110533014
XM_036989014.1 mRNA upstream 58826 94342871 ~ 94346114 (+) True LOC110533014
XM_036988986.1 mRNA upstream 126365 94273861 ~ 94278575 (+) False LOC118936691
XM_036988993.1 mRNA upstream 126365 94273861 ~ 94278575 (+) True LOC118936691
XM_036989135.1 mRNA downstream 116846 94522396 ~ 94559917 (+) True LOC110514579
XM_036989146.1 mRNA downstream 160458 94566008 ~ 94639453 (+) True LOC110519363
XR_005053416.1 mRNA downstream 235671 94641221 ~ 94642172 (+) True LOC118966139
XM_036989163.1 mRNA downstream 237143 94642693 ~ 94715672 (+) False LOC110499554
XM_036989175.1 mRNA downstream 237143 94642693 ~ 94715672 (+) False LOC110499554
TU114956 other upstream 11625 94314693 ~ 94393315 (+) True G102769
TU114886 other upstream 157009 94245497 ~ 94247931 (+) False G102740
TU115185 other downstream 83132 94488682 ~ 94522297 (+) True G102912
TU115224 other downstream 149514 94555064 ~ 94556189 (+) False G102936
TU115225 other downstream 149514 94555064 ~ 94556189 (+) False G102936
TU115226 other downstream 149514 94555064 ~ 94556189 (+) False G102936
TU115227 other downstream 149514 94555064 ~ 94556189 (+) True G102936

Expression Profile