snx10b (LOC106593746)


Basic Information

Item Value
gene id snx10b
gene name LOC106593746
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 7369343 ~ 7377095 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936694.1
GTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTGGTATACTGTTTAATGTAGAACATGATAGTAGATGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATATAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGATGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGATGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGATGGTATGCTGTTTAATATAGAGCATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGATGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATATAGAGCATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTGGTATACTGTTTGATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTGGTATACTGTTTAATGTAGAACATGATAGTAGATGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATATAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACATGATAGTAGACGGTATACTGTTTAATGTAGAACACAGCCAGGGGTTCTATTAGTGACCATGAGGATTTGATGAGTTACTCTGATCAAAATGTGACGTCACATATGAAAAAAGTATATCTGATGTGATTATGTTAATTTTACCCAGTCACTGATTGTTCTCAGCCACTGATTGTTCTCTTAACCAAATATTTATCCACCAACCTGTATTTGTTACTGATAAATCATTGTTTTGTTAAGGGGCCCAGAGTTATATATGTTCAGGACAAACTCCAGTCCCTACACAAAAATGACTGACACTGCATTCATTGTGCACCTCTCCCATGACTGGAATGTTTATGGGACAATGTCTGCATCCCAAACAGAACCCTACttcctttgtagtgcactatatagggaatggtctGCCATTTGAGACTGCCATTCTGTTGAACCTTTTGTTCTGGGCTGCCTTTGAATAAGTTACTGTACCTGTTGACCTTTGATCTATGAAGTGTCTGTCTGTGAATAAAGGTAACTGTCACCCTGTGAGCCTTTAATGTCCTGTTTCTCAGATCATCCACATTAACACACACTcaatgacaacaaacacaaacaacGGAGTAAAACAATCACGTTCTGGGACAGTTGTACTAAGACTGCATTTATAAATGATATTCTTCAAGAGAAGAGAATATATCATTCAGTGAATGACCATTGTACAGCAGCAAATATAGCAGATTGTACCTTAACAAGATGGCACCTTATAAGCTACAGTAAGGCGTTGTTCAGTAGATTTGGTGACCAGAGAAAGACATacagacatagagacatgacAGTTGTATTTGTACTATGTGGATACAAACCAACACACCTGTGACTTCCAGGTGTGCTCAAGTACTCTATGAAATGGGATTCAAACGAGGAAGCTCAGCAGAACGAGCATTGCAGTgtcacatagaaacacacagtgACGTTGCAAATGTGGTCCAGGTCAAGAGGCAGTGTTGGTTACTACACACTGTTTTACTAGACAACAGAGCAGCGGTTCTATCCTAGGGTTGTATAGGGTTCTATCGCGGTCATTGTTGTTACCATCTTGATCCTAGGGTTGTATAGTGTTTTATTAGGTACTTCCAGGTCAGACGGTCCAACAGACCAACAACAAATACAGACGGAACGTCTCCGTTACCTTATATGGTACACAATAACATGTTTTATATCAGAGATTTATGGAAGCAGCACAAGGTGTTCCTCAATCCTCTGTCCTGTGACTGTTTGGAAACCTTCAGACCTgtttgtccataataaagagGGATCAGCTGTTCTCTCAGAACATACCATTCATTCCCCAGTCCACCGTGGATTCGATCTGATCGGGATCTGAACTTGAAGAATGAGAGAAGGGATTGACAACCTTGTGTTCCAGTTTATCAGTGTCTGGGTTCGGGATCCTCGGATTCAGAAGAAGGACTTCTGGCATGCCCACATGGACTATGAAATCTGTATACATACCAACAGTCTCTGCTTCACCAAGAAGATCTCCTGTGTGAGGAGAAGGTACCGTGACTTCGTATGGCTCCGGCAGAAACTGCAGGCTAACTCCCTACTCATGGTCCAGCTGCCTGAACTACCACCTAAGAACCCTTTCTTTAACCTGAACAACGCCCAGCAGATCACAGAGAGGATGAAGGGCCTCCAGAAGTTCCTTCAACTGACCCTGGAGAGTAATCTGCTTCTGTCAGACAGCTGTCTGCACCTCTTCCTGCAGTCGGAGCTGGGGGTGTCCCAGATAGAGGCCTGCGCCTCAGGTAGAACCCATTACTCTGTGTCCCAGGCCGTGCTGCGCTGCGGCTGCAAACTGCAACGCTTCCACTCCCAGGAGGACCTGTTAGAGACCAGCCGCAAGGAGTCCTGTGACTCCGACTCTGTTAGTGGATTTGTAGAGCCGGCGCCCAGCAGTAAAGATGGAGCTGCTTCCTCACCCACAGAGACCCTAGATCTGTCTCTACGTGATAGGACCAGACCTAACCACAACCAGGAAGAGACCCTAGCTCTGTCTCTACCTGATAGGACCAGACCTAACCACAACCAGGAAGAGACCCTAGCTCTGTCTCTACCTGATAGGACCAGACCTAACCACAACCAGGAAGAGACCCTAGCTCTATCTCTACCTGATAGGACCAGACCTAACCACAACCAGGAAGAGACCCTAGCTCTGTCTCTACCTGATAGGACCAGACCTAACCCCAACCAGGAAGAGACCCTAGCTCTGTCTCTACCTGATAGGACCAGACCTAACCCCGACCAGGAAGAGACCCTAGCTCTGTCTCTACCTGATAGGACCAGACCTAACCCCGACCAGGAAGAGACCCTAGATCTGTCTCTACCTGATAGGACCAGACCTAACCCCGACCAGGAAGAGACCCTAGCTCTGTCTCTACCTGATAGGATCAGACCTAACCCCGACCAGGAAGAGACCCTAGCTCTGTCTCTACCTGATAGGACCAGACCTAACCCCAACCAGGAAGAGACCCTAGCTCTGTCTCTACCTGATAGGACCAGACCTAACCCCGACCAGGAAGAAGACACTCTCAGCATGTCTGTCTCTCCATGGGAACATCACATCCAACCAGGACATGGTAACTTACAatattctgcatcccaaatgtcacccgatagtgcactactttggaccagagccctatgtagggaatagggtgctattttggacACTGTGTTTGCTCTCATTTCATCTTAAAATAATGTTCCCCTCCCACACAGCTATTAAAATAAGGCTTCCACACAGCTTTTAAAATAAGGCTTCCACACAGCTTTTAAAATAAGGCTCCCACACAGCTTTT

Function

NR:

description
PREDICTED: fibrinogen alpha-1 chain-like isoform X2

GO: NA

KEGG:

id description
K17924 SNX10_11; sorting nexin-10/11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936694.1 True 4088 mRNA 0.42 6 7369343 7377095

Neighbor

gene id symbol gene type direction distance location
cbx3b LOC106573104 coding upstream 195 7358905 ~ 7369148 (+)
pde11al LOC106573285 coding upstream 64634 7282430 ~ 7304709 (+)
LOC110535004 LOC106596209 coding upstream 290266 7067283 ~ 7079077 (+)
LOC110535127 LOC106592104 coding upstream 290368 7030625 ~ 7078975 (+)
mpp6a LOC106594438 coding upstream 374628 6944265 ~ 6994715 (+)
tax1bp1b LOC106594183 coding downstream 119088 7496183 ~ 7531274 (+)
creb5b LOC106573409 coding downstream 238815 7615910 ~ 7706660 (+)
chn2 chn2 coding downstream 355862 7732957 ~ 7805441 (+)
plekha8 plekha8 coding downstream 438155 7815250 ~ 7829304 (+)
LOC110514761 LOC106597212 coding downstream 453128 7830223 ~ 7857449 (+)
G110184 NA non-coding upstream 23621 7344697 ~ 7345722 (+)
G110182 NA non-coding upstream 25241 7343731 ~ 7344102 (+)
G110180 NA non-coding upstream 27563 7341445 ~ 7341780 (+)
G110177 NA non-coding upstream 31234 7337746 ~ 7338109 (+)
G110175 NA non-coding upstream 32791 7336344 ~ 7336552 (+)
G110208 NA non-coding downstream 8863 7385958 ~ 7386639 (+)
G110215 NA non-coding downstream 24438 7401533 ~ 7402196 (+)
G110218 NA non-coding downstream 27962 7405057 ~ 7406859 (+)
G110223 NA non-coding downstream 48451 7425546 ~ 7425830 (+)
G110225 NA non-coding downstream 51035 7428130 ~ 7428618 (+)
G109821 NA other upstream 228364 7135247 ~ 7140979 (+)
LOC110535156 LOC106606167 other upstream 426260 6941465 ~ 6944043 (+)
malsu1 malsu1 other upstream 458138 6908511 ~ 6911256 (+)
rbm24b LOC106596654 other upstream 500367 6855864 ~ 6868976 (+)
G110644 NA other downstream 521501 7898596 ~ 7935137 (+)
G110674 NA other downstream 696271 8073366 ~ 8103920 (+)
LOC110518388 LOC106598833 other downstream 1659709 8820359 ~ 9072449 (+)
LOC110535224 aif1 other downstream 1844390 9221418 ~ 9229025 (+)

Expression


Co-expression Network