rbm12ba (LOC106605943)


Basic Information

Item Value
gene id rbm12ba
gene name LOC106605943
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 14867830 ~ 14870776 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961999.1
CCTCCCTACTTCCCTATAAAACGCGCGCATGCGGCAGCTCGTGCACAGTTAATGTGGTCGGGCTCATAAAGGGACAACATTTCGACCTATCAGCATCACACAAACTTACGATATAAAGGTTAAAATACAGAGGAGCCAGAGTTGTTATGGTTTTCATCTGATCTCTGGTTGCCAGATAAAAGGAGTTCAATATGACCATAGTACTTCGGTTGCAGGGTCTGAATATTAAGGCCGGGACTGAAGACATACGCAGATTCTTTACCAACTTATACATCCCAGAAGGTGGTGTATATATTATAGGAGGACACCTTGGTGAAGCGTTCATTGTGTTCACTACAGAGAGAGATGGCCAGCACGCAATAAGGCGCTCTGGAACTCTTCTTAGAGGGTCTCCGGTGACCCTACATATTAGTAGCATCGCAGAACTGCAACGAAAAATGGAGTCCAAACTACAGAGTGAGAAGCTCATTCCAGAGTTGTTACCTGAGAAGAAGCCTTTGCTGCCCTTGCCCGACCCTGCCACAGCCCTACTGTTCGGCCTTGTTGCTGTTATCCAAGGACTGCAATCTAATCAGCCAGGAGAGCACAGCAAAGCGACAGTAGCACCTGGTCCTGTGCTCAGGGCCAATAGCCCAGCTGTCGGTTGTGTGCTCAGGGCTGATAACACAGCTGTGCCTGGGAGTGAGCTAAGGAGACCAGATAAGGCTTACAGGCCAAGACCAGGCTATGTCAGGCTCTTTGGCCTGCCAAAGACTGTCACCAGCCAGGATATCTGCCACTTCTTCAAAGGCCTGTTGGTCCAGGATGTGATAGCTAATGTGAAGCTGGGCGTGAGACAGGGCTGCCTTGTAAAGTTTGGGCATGCCCAGGACGCATGTGATGCCCTAAGCTTCAACCACCAGCAACTGGGCCGCATCAGCGTGGAGGTCCGTGGGGCCTCTGAGGAGATGTGGAGCTATGCCGTCCAGCAGTGTCAGAACCCTTCATATGATCCCTTGGAAACCCCCTTGTATAGGCCaacaacccagagagagagaacctcatACAAGCCCCAAGAAATGCCCTCATATACAATCCAGAGAGATGGACCCTCATTAGAATCCAAGGAAATGCAGCACCAGGAAAGGGCAAGGCCCTCATACAGAACCCAAAGACAAAGCTTGTATGAACCTGCCAGAGAAATACACAGGACCTGGGCCAAGAGGCGCTCTGAAGACAGATCGCTGTCACGGTCACCGAAGAGGCCCAGATCCTGTGAGTCCCTTTCACTGAGCGTGGAGTACTGTATTATGGCCAAAAATCTATCGAAAACAATAACGAAGACTGAGATAAAAGAATTGTTTGGCTGTCCGAACATCGCCAACAGCAAAATATTACACTTACTGTATAAGGATAGCGAGAGGACAGATACAGCGTTTGTAATATTCGACCAAACGGAAGACTACGTTTATGCTTTGAACCTCAACGGCTGCCATGTTGGTTCCCAGGCCATAGACGTCTCATCTGTCACCAAGGAGAAGATGCAAGCCATGTTGTCAACTGGGAGACACCATGGCAACCCCAAGACAACACCAGCAGTGTCAGAGCGAAGCGAGGAGAAACATCAGATTGTGAGACCCAGGGTGAGACCGTTTCCCACAGCACAGACATGTGTTTACGTACGAAACCTCCAGTCAGACGTGACGAAAATGGAAATAAAAGATTTTTTCTGTGACCTTCCTCTGACTGAACAGTTTATCTACATTCTGTGTGATCAAGATGGCAATGGCATCGGTGAGGCTGTGGCTCAGTTTAAAACTGAGGATTTTGCCACACAGGCCCAGAAACAACATGGCAAGACATATATGGGGACCAGAGTGCTGCTCACCTGTATCAACTTCCAGCAGATGGAGGACATCTTGAAAAGGAATGCGTGAGGAAAGATGGCCTACTTCTCATATTTACATTtgttatttagcagatgctcttatataGGACTGCAGTCTAATCAGCCAGGAGAGCACAAAGCGACAGCACACTTTTTTTcctactggtcccccgtgggaattgaaACCCAAACCTtagcgttgcaagcgccatgctatACCAACTGAGAAATACTGGACAactgttgaccagagccacaTGGGGATCTGGTTGGAAGTAGTGGACTCTATGGGGATAGGGTGTCATCTGTCGTAGTGGCTTCGAGAAGTATTAACCCCATACCCTCCAGTCATCAAGTTACATTTGGACAAGTCTAAACTGGATATGAGTCAATATCCATTGTTATTGAATGATTCCAACACCTTTCAATACCAATGGGAGCAAATCATTCTACACCTACAGGTTGATTTAAATGCATTTCAAACTGCAACAGTGAGTGACAATGTTTGAAAACCAGCAACAGGACAGCATTTCTGTTCTCTTCTGACACAGTATTTCTTTTATTGGAATTTTCATTCCAAATATTACTTTATGAAaccaatatgtttatttttgtcaCTAATTAAATGTTACAAAAATGA
>TU133344
CGGGCTCATAAAGGGACAACATTTCGACCTATCAGCATCACACAAACTTACGATATAAAGGTTAAAATACAGAGGAGCCAGAGTTGTTATGGTTTTCATCTGATCTCTGGTTGCCAGATAAAAGGAGTTCAATATGACCATAGTACTTCGGTTGCAGGGTCTGAATATTAAGGCCGGGACTGAAGACATACGCAGATTCTTTACCAACTTATACATCCCAGAAGGTGGTGTATATATTATAGGAGGACACCTTGGTGAAGCGTTCATTGTGTTCACTACAGAGAGAGATGGCCAGCACGCAATAAGGCGCTCTGGAACTCTTCTTAGAGGGTCTCCGGTGACCCTACATATTAGTAGCATCGCAGAACTGCAACGAAAAATGGAGTCCAAACTACAGAGTGAGAAGCTCATTCCAGAGTTGTTACCTGAGAAGAAGCCTTTGCTGCCCTTGCCCGACCCTGCCACAGCCCTACTGTTCGGCCTTGTTGCTGTTATCCAAGGACTGCAATCTAATCAGCCAGGAGAGCACAGCAAAGCGACAGTAGCACCTGGTCCTGTGCTCAGGGCCAATAGCCCAGCTGTCGGTTGTGTGCTCAGGGCTGATAACACAGCTGTGCCTGGGAGTGAGCTAAGGA

Function

NR:

description
RNA-binding protein 12B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961999.1 False 2507 mRNA 0.47 3 14867830 14870776
TU133344 True 635 TUCP 0.48 2 14869712 14870718

Neighbor

gene id symbol gene type direction distance location
tex10 tex10 coding downstream 7357 14837589 ~ 14860473 (-)
trnat-cgu NA coding downstream 33359 14834399 ~ 14834471 (-)
LOC110535698 LOC106593159 coding downstream 72804 14774313 ~ 14795026 (-)
alg2 alg2 coding downstream 311623 14550685 ~ 14556207 (-)
LOC110508190 LOC106606061 coding downstream 334590 14528061 ~ 14533240 (-)
LOC110534175 cdh17 coding upstream 31612 14902388 ~ 14923867 (-)
gem LOC106605946 coding upstream 55326 14926102 ~ 14929989 (-)
LOC110507950 rad54b coding upstream 69902 14940678 ~ 14974356 (-)
LOC110507959 LOC106570748 coding upstream 90603 14961379 ~ 14968483 (-)
LOC110507888 LOC106570745 coding upstream 110268 14981044 ~ 15004730 (-)
G116038 NA non-coding downstream 2346 14865127 ~ 14865484 (-)
G116034 NA non-coding downstream 17510 14847426 ~ 14850320 (-)
G116017 NA non-coding downstream 45332 14821970 ~ 14822498 (-)
G115999 NA non-coding downstream 81559 14782021 ~ 14786271 (-)
G115981 NA non-coding downstream 118672 14748773 ~ 14749158 (-)
G116019 NA non-coding upstream 21211 14891987 ~ 14892843 (-)
G116066 NA non-coding upstream 62475 14933251 ~ 14933503 (-)
G116067 NA non-coding upstream 63538 14934314 ~ 14934513 (-)
G116088 NA non-coding upstream 108644 14979420 ~ 14979909 (-)
G116014 NA other downstream 51169 14815279 ~ 14816661 (-)
G115601 sc61b other downstream 302431 14556423 ~ 14565399 (-)
tmem245 LOC106595499 other downstream 341310 14508116 ~ 14526558 (-)
LOC110535605 LOC106574865 other downstream 455654 14408991 ~ 14418164 (-)
G116023 NA other upstream 14363 14885139 ~ 14886488 (-)
G116125 NA other upstream 213851 15084627 ~ 15084939 (-)
G116613 NA other upstream 423637 15294413 ~ 15294812 (-)
G116620 fam171a1 other upstream 438123 15308899 ~ 15312600 (-)

Expression


Co-expression Network