LOC110507959 (LOC106570748)


Basic Information

Item Value
gene id LOC110507959
gene name LOC106570748
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 14961379 ~ 14968483 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938649.1
gtaattatgaagtccttggctggtcatgacacacatcaacaccatcatcacagacaccctaaacccactccaattcacataccatcccaacagatccacagatgatgcaatcttgcACTTCACACTACCCTCTTCCACCTGGAGGGGAAATAACTGacaatgctgttcatagactacagctcagtgttcaacaccatagtccccctCCAAGCTCCTCACCAAGctagggaccctgggactgaaccctGGGACGGGACCCTGGGacgggaccctgggactgaaccctgggactgaaccctgggactgaacccctccctctgcaacttaaCCACAAAGCACTACAGAGGTTGGTGCGGCaacccagtgcatcactggggccatgctccctaccatccaggacctctatatcagaggaaggcctgaaaaattgccaaagactccagccaccctaactATAGACTGTTTACTCTGCTACCGTCTGGCAAACGGTATTGGAGCACCAGCTCTCAGACCCACAGGCTCAGTTAAAAAGCTGTTCATTTTTGTCAGCCTGATTTAGGCCTTAGCCGATTTTCGTTGGTGTATTTTAGTTTTGACTAcaaattaaattattttttatttgcaaACCCTCACGTGTGCCTGGACTGGAGAATATTTTATGCCACTTAACACCTATTTGTGGTTATAATTTTTCCTTGAAACCAAGATCATGTATATGCTGCTTTAGAAATGCAGCAAACCGATATCGCCTTTCAAAGGTGAGCGACATTTAGTCTATCCATTTAGGACTGGCAGGGATTTATTTGATGCTCTGGCTTGGGCTTCagtgaaacaaacacacactgaatgaAGCCTAGCCAACTGTAACAAGCCTATGTTTTAATGACAGCAGGTCCAGCATTATGCAAATGAGCGTGGGTAGTGCAGCGGCAGCGCGAGGCAGATTAGAGCTGTGCCTGGGATCAGTGAGCACACGCgctctatccccctccctctcagagcaactagtgcctctgtctgtctctcctttctccgcttttcctctctctttagCTTTTCACTAGTTTTTCCCTCATTCTGTTGTTCCCGTCGGCGGATGATTCGTGTGTTTCTCTTTGAGAAGCAGCTCTGATTTTCCTTTGTGTAAAATAATCGCGCATTCGCACGGACTCGCGCTGCGCGCACACCGCTCCGGTTAAACCAGCGCCGTTTCCTCTTTTCTAGTTAAACGGAAATAAGAATAAAGAAAATGCATCATTACAATTTCATCGGTATTTCCCCATGTaagcacacacactccccccGTATGTTAGTATTTGGTGTATAGCACTTAGAACGAGCGCTGGTTTGAGGTTTAGAGAGACCGGGCTGTAAGTAGGTCGGGCTGGGTTTAAGCGGCTTTAGCCTGCGTCAGCCTAAGCTGGGAGGAATTCACCCAAAGCCCTCCGCGGTAGGCGGGGGCCTAAACGAGGCTGGCCTAGTTAAGCCTGATTCTTATTGTTGCCCGTGTGTGTTGTGTAACACAGAGCAGAGAAGACCTCGGATGAGAGAGAGTACATGCGTTAGACAGACTGTTTGATTGAGAATCCATGAAgggggagaaagaagagggacaaggaagagagtgagtgagagttaAACCAGTATTAGCCTGAGCCTCATCACAGAACAGAAAGAAAAGGGAGGTAGAGAACCAGACCAAATCTCAAAAGAAAGAGGAATATAAGCGAGATATTGTGTTGAGTTAGTGCTGGTGTCTAGGCCTGGCTCGGTCCATTCTGGTTCCCTGGGCTATGTTCTAAGATGGCGTCTGGGTCCGTCTACATGTCGTCCAGTATGGTGGGTAAGGCTCGCTCCTCCAACTTCACCCTGTCTGAGAAACTGGACCTGCTGAAGCTGGTCCGCCCACACATTCTCATCCTGGAGGAGCACACCAACAAGCACGCTGTCATCGTGGACAAGAACAAATGCTGGGACACAGTGTCTGATCAGTACAACGTCCTGGGGGGGGACAGGCCCCCCCGCACTGCCCAGGGCCTACGCACCCTCTACAAGAGGCTGAAGGAGTCAGccaaacaggaagtgatgcaacGGAGACACGCCCAGCCAGAGTACAGAGGAAGTATATCTGAACCAaccaggagagtgatggagatgaTACCTCACCTTTTCCATCATGGCGCTATCCACCATGATAAAGACCCAGCGACGATgcacagGGTGATGTATAAGCATGACTCTCCCATGGAGCAACCTGGCAGCAGCTCCTCCCTCCCAGACTACCCATCAAACCCCGTCACCCACCACCTGGACCAGGATGTGGTCAGGCTGGACCAGGATGTGGTCAGGCTGGACCAGGATGTGGTCAGGCTGGACCAGGACGTGGACGTGAAGCCTCCGCCAGACCTGACCATCCTCTCCACGCGTGTGGGGGTGGTGCTaggaggagagggggcagaggaggaagatgaggactTGGGCAGTGTCCATGGTTATGAcggctccctctctccctgcccatcCTCTGTCGTCCTGCCCCTCTCCACCTCACCCGTTCCACTGCAACGTGACCTTTACCTTCATGACCACTACCCCCGCCGTGACCCTGACAGGCTCCGTCCCCTTCAGCTGGCCAAGGAGGAGCACGAGCAGGTCATGACCAATCACAGAAAGATGGGCGTATacctggaggagaagagggaggggctAAAGAGGAAGCAGGAACTGGAGGAGGAGCTTCTGAGAGCAAAAATCAAAGTAGAGAAACTGAGGGCAGCCAGGCTGAGACATGGACTTCCACTGCCCCTATAACTAACACACCCATGGCCTGACTGGGCTGACCATATGGAACTCAGGAGGATGCTCTGAactgtttctatgtctgtgtttagtgtgtggAAGAGGGGTTTGGCCTGAGAAATCATGTTTGTGTGATGAACAGTGAGTTTGAGGGAGGATttcaaggtccaatgcagccttCTCAAtctcaaatcatttctgggtaacaatgaattacattactgtgattgttttctatTAAAATGCTCAAAAAGAGACAAAAATAGATTTTTAGCAAAGTTCAATTTCTCAagtaagaattttgctaggattgtctgcgagtggtctgagtggggaggggaaaattgATAACAAACTATTATTGGCTGAACGGTTTtcaactctctttcttattggtctattaacacatttatggtgatgtcaccaggcaggccaaaactccatcccaccaaaatagGCTGACATTTCAGCCGATCTTTTCTAACAAGCTAAAAAGGCATTATCATAGTTTTCACCATTTCACATTATTCCaatctcatagtgtggaaatatacagtaccagtcagaagtttagaCACATCTACTAATTcaattgtactattttctacattgtagaataatagtgaagacatcaaaactatgaaataacacattgatttttttttaaacaaacacatATTGCACTAAAAAAGTGTTcgacaaatctaaatatattttatattcttcgaagtagccacccttttgtcttgatgacagctttgcacactcttggcattctctcaaacagcttcatgaggaatgcttttccaacagtcttgaaggag

Function

NR:

description
fibrinogen silencer-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938649.1 True 3623 mRNA 0.48 2 14961379 14968483

Neighbor

gene id symbol gene type direction distance location
gem LOC106605946 coding downstream 31390 14926102 ~ 14929989 (-)
LOC110534175 cdh17 coding downstream 37512 14902388 ~ 14923867 (-)
rbm12ba LOC106605943 coding downstream 90603 14867830 ~ 14870776 (-)
tex10 tex10 coding downstream 100906 14837589 ~ 14860473 (-)
trnat-cgu NA coding downstream 126908 14834399 ~ 14834471 (-)
LOC110507888 LOC106570745 coding upstream 12561 14981044 ~ 15004730 (-)
LOC110507990 LOC106605949 coding upstream 60962 15029445 ~ 15053639 (-)
LOC110507929 LOC106593870 coding upstream 85293 15053776 ~ 15066163 (-)
LOC110508040 cf191 coding upstream 108239 15076722 ~ 15079165 (-)
LOC110520773 NA coding upstream 139271 15107754 ~ 15119441 (-)
G116067 NA non-coding downstream 26866 14934314 ~ 14934513 (-)
G116066 NA non-coding downstream 27876 14933251 ~ 14933503 (-)
G116019 NA non-coding downstream 68536 14891987 ~ 14892843 (-)
G116038 NA non-coding downstream 95895 14865127 ~ 14865484 (-)
G116034 NA non-coding downstream 111059 14847426 ~ 14850320 (-)
G116088 NA non-coding upstream 10937 14979420 ~ 14979909 (-)
G116106 NA non-coding upstream 44075 15012558 ~ 15013158 (-)
G116110 NA non-coding upstream 51307 15019790 ~ 15021131 (-)
G116111 NA non-coding upstream 53698 15022181 ~ 15026590 (-)
G116023 NA other downstream 74891 14885139 ~ 14886488 (-)
G116014 NA other downstream 144718 14815279 ~ 14816661 (-)
G115601 sc61b other downstream 395980 14556423 ~ 14565399 (-)
alg2 alg2 other downstream 405211 14550685 ~ 14556207 (-)
G116125 NA other upstream 116144 15084627 ~ 15084939 (-)
G116613 NA other upstream 325930 15294413 ~ 15294812 (-)
G116620 fam171a1 other upstream 340416 15308899 ~ 15312600 (-)
G116689 NA other upstream 469267 15437750 ~ 15442972 (-)

Expression


Co-expression Network