LOC110487571 (m4a8a)


Basic Information

Item Value
gene id LOC110487571
gene name m4a8a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33030310 ~ 33033853 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559474.2
AAGTGAGGAGGAGGGCCTGCTGGGAACTAGCTGAGACTGGCTGAGCCCTCCCTACAAGCTACTTCCCTGTAAGAAAACCAAACTGCGCAACAAGCAGACTAGTCTACCACTGTGATTGCACAGGACCTGTAGAGGTGTCCATCTCAATTGCAGGAACGGAGCTGTGTAACCAAGAGTGGCCAGCATGTCAGTGACTGTGACCAAAGGTGGAGGGGTGACTGTATTTACAGTGAACTCTAAAGAAGGAAGCAGTTGGCCCCTGCTGTGTCAAATACTTGGGACCTTGTGCTACAGCCCAGCATGCTCTGTGTCCCAGGGACTGCGGAGGCTCCAATCAAGTTCCCAGTCAGCTCTGGGGACTATACAGATCATGGTGGGAGTTCTCAACATTGGCTTGGGAACAATCCTTGTTAGCACTGATTATTCTAGCTTACTGCGATGGAATGGGGTTCCTTATTGGCTTGGTGGTGTGTTTATAGCAGTTGGCATCATGTGTATCTTGGCTGAGAAGTTCCCCAGTCCCTGCTTGGTGGGCATCAATGTGTTGATGAACCTGTCAGGTGCTGCTCTGGCCATTACTGGAATTGTGCTGTATGCTGTAGACCTGGCAAACTACCATTTCTGGTGGATTTGCAATGATGACCACTACAACTGGCGAGATGACTACTATGGTGGCCAGGTGACAAAACCCCCCAGTGATCCGGAGAGGGATATACTCTTGGCGAAATGCAAAGATGCCAAGCAGATTGCACAGATGTTGATGAATGCCTTGGAAATTGTGCTCATCGTCCTTGCAGTTCTTCAGCTTTGTGTCACCATAAGCTCTGCGGTGTTGGGTCTCAAGGCTTTGTACAAGAATGGAAAGGAGGGAAAAGAGAACTTCCGGGACCTGGAGCAGTATAAGCCTCTGCTGGAGGAGGTCACCACTAACCCTGCAGCTTAAAGagcactgatctgatctgatctgatataCTTTATTGACCACGTGGGGAAATTTGTCATGGACGATTAAAGAGTGGTGCTGCTTCCACAtggaatacataaataaatagaaTAAAATGTATTCTACATAAATGGATCATCATACAACCCCCTCCACACCCACACATTTGTtgttatacatacagtatgtagtacaTATAGTTCACTTACTTAATGTACTGTAACGTCTACTGTGACTTTGCTTTGTGTAAATGACAACTGACACTGATTGTATGTCTTCATGCTTTTTGTATTTGTCTTTTTTACAAAACTGAAAGGACAGTTATAAAGGGGACTATATCAAGTTAATTACTGAATTGACTGTTGTATATTAA

Function

NR:

description
uncharacterized protein LOC110487571

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559474.2 True 1316 mRNA 0.45 7 33030310 33033853

Neighbor

gene id symbol gene type direction distance location
LOC110487479 LOC106605309 coding upstream 28304 32988834 ~ 33002008 (+)
LOC110487447 LOC106605310 coding upstream 90500 32896415 ~ 32939810 (+)
LOC110487411 LOC106605313 coding upstream 148252 32877901 ~ 32882058 (+)
LOC110487428 NA coding upstream 154460 32873188 ~ 32875850 (+)
LOC110487398 LOC106605316 coding upstream 178167 32775600 ~ 32852143 (+)
tmem176l.1 m4a8a coding downstream 11979 33045832 ~ 33049288 (+)
LOC110487588 NA coding downstream 96464 33130317 ~ 33160062 (+)
LOC110487649 LOC106581815 coding downstream 282437 33316290 ~ 33321834 (+)
LOC110487688 LOC106605287 coding downstream 372956 33406809 ~ 33408519 (+)
ntrk1 LOC106605284 coding downstream 400845 33434698 ~ 33460997 (+)
G133272 NA non-coding upstream 17401 33011062 ~ 33012909 (+)
G133374 NA non-coding upstream 48282 32981182 ~ 32982028 (+)
G133324 NA non-coding upstream 185776 32844251 ~ 32844534 (+)
isg20l2 isg20l2 non-coding upstream 424711 32597101 ~ 32605620 (+)
G133415 NA non-coding downstream 47834 33081687 ~ 33081982 (+)
G133417 NA non-coding downstream 49495 33083348 ~ 33083575 (+)
G133432 LOC106605295 non-coding downstream 69077 33102930 ~ 33135626 (+)
G133439 NA non-coding downstream 110521 33144374 ~ 33173378 (+)
G132342 LOC100136303 other upstream 1142738 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 1663988 31360408 ~ 31366322 (+)
LOC110534710 LOC106605356 other upstream 1737276 31262054 ~ 31294577 (+)
G131517 ccne2 other upstream 2280356 30748055 ~ 30749954 (+)
G131491 NA other upstream 2329687 30700182 ~ 30700623 (+)
G133473 LOC106605294 other downstream 133585 33167438 ~ 33169378 (+)
G133663 LOC106605282 other downstream 462601 33496454 ~ 33497285 (+)
G133760 LOC106605274 other downstream 780180 33814033 ~ 33814483 (+)
G134735 LOC100136012 other downstream 928564 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 1654102 34687955 ~ 34692286 (+)

Expression


Co-expression Network