LOC110487688 (LOC106605287)


Basic Information

Item Value
gene id LOC110487688
gene name LOC106605287
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33406809 ~ 33408519 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559607.2
GGGCCAGGCCCCTTTTCTCCACCAGGAGCTATAAAACCCCTTGGCCCCAGACACAAGGTACCGTTAGGTCCAAGAATCCCCAGAAATAAAGatccACCTTGCCCATTAGCAATCATGAAATTCTCTATCGTCGCTGCCCTTGTTGTTGTACTGGCCATTGgCTGTGAGTCCAGTTCCCTGGTGAAGCGTGACATCCCTGCTGAGATCGAGACTCTCACCAAGTACTTCCAGGACGCCATTGAGAAAGTGAAGTCTCATGAGCTGATCAGCCAGGCTCAGGGTTACCTGGAGGAGGGCAAGACTCAAATCACGCCTCTGACCGACAAGATCCAGGAGCATGCTGAGAAGATCCAGGAACAGATGAAATCCTTTGTCAGTGACATCGAGAAGCAAGTGCGTCCCATGGCTGATAAACTGCAGGCCCAGTTCATGCCTCTGGTCGACAAGATGGAGGCCCAGTTCAAGCCTCTGGCTGATGACTTGCAGGCCCAGATGGAGCAGCTCTTCCAGACCGTGGTTGACCAAACCAAGGCTCTCCTCCCACCCCAGTAAAGCTAACGTAACATCCCCATAGCTTGGGTTCACTTTTGGTTCAGCCCAGACCATAGAAAGGAAAAACCATCTCCCCTCTGTCTGTTTCACCTGCGTCAAGTCTACCTCACTCCTTCTCTTGACATCACCAATAAAGGGCTTGAAAGGTGA

Function

NR:

description
type-4 ice-structuring protein LS-12-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559607.2 True 702 mRNA 0.52 4 33406809 33408519

Neighbor

gene id symbol gene type direction distance location
LOC110487649 LOC106581815 coding upstream 84975 33316290 ~ 33321834 (+)
LOC110487588 NA coding upstream 246747 33130317 ~ 33160062 (+)
tmem176l.1 m4a8a coding upstream 357521 33045832 ~ 33049288 (+)
LOC110487536 NA coding upstream 361088 33028873 ~ 33045721 (+)
LOC110487571 m4a8a coding upstream 372956 33030310 ~ 33033853 (+)
ntrk1 LOC106605284 coding downstream 26179 33434698 ~ 33460997 (+)
LOC118939517 NA coding downstream 123071 33531590 ~ 33540695 (+)
LOC110487797 LOC106605278 coding downstream 259624 33668143 ~ 33694941 (+)
LOC110487856 LOC106581981 coding downstream 311314 33719833 ~ 33726238 (+)
tap1 tap1 coding downstream 324925 33733444 ~ 33746441 (+)
G133551 NA non-coding upstream 43903 33359978 ~ 33362906 (+)
G133552 NA non-coding upstream 47091 33359158 ~ 33359718 (+)
G133567 LOC106605290 non-coding upstream 77675 33327043 ~ 33329134 (+)
G133566 NA non-coding upstream 80460 33326029 ~ 33326349 (+)
G133565 NA non-coding upstream 81454 33325140 ~ 33325355 (+)
G133648 LOC106605285 non-coding downstream 58211 33466730 ~ 33471416 (+)
G133655 NA non-coding downstream 73764 33482283 ~ 33482552 (+)
G133670 NA non-coding downstream 95625 33504144 ~ 33504466 (+)
G133676 NA non-coding downstream 101026 33509545 ~ 33509807 (+)
G133677 NA non-coding downstream 103793 33512312 ~ 33512793 (+)
G133473 LOC106605294 other upstream 237431 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 1519237 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 2040487 31360408 ~ 31366322 (+)
LOC110534710 LOC106605356 other upstream 2113775 31262054 ~ 31294577 (+)
G131517 ccne2 other upstream 2656855 30748055 ~ 30749954 (+)
G133663 LOC106605282 other downstream 87935 33496454 ~ 33497285 (+)
G133760 LOC106605274 other downstream 405514 33814033 ~ 33814483 (+)
G134735 LOC100136012 other downstream 553898 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 1279436 34687955 ~ 34692286 (+)
G135916 NA other downstream 1563121 34971640 ~ 34971931 (+)

Expression


Co-expression Network