LOC118940237


Basic Information

Item Value
gene id LOC118940237
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42314091 ~ 42340473 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036768.1
CCATACATAGGACCAGTGGGACCTCCAGGAAAAACCAAACCAGAGGTCCTCTTTGAATACTGTTGACTGACAGTGCTGGCGGGCTGGCAGGATGGATAGCATGACTGGCAGACACTGCTGGGGTGGCATGCCTCCACAGGCCGTGTAGAGTGCCAGCTTGCCCACAGGGATGCCCATGCCGTAGCAGCCCAGGTCCCCCAGGCCCAGGATCCTCTCTCCGTCTGTCACACACACCGCCTgtcaatcacatcacatcacacctgTCAATCATACCTAAGAAGAACGCTGTAGGCCAAGACTTTGTCTGGCTCTTGGAGATCACGATGACTGTTGGAATCCTGAGGCGActatgtgaaaaatctgtcgatttGCCCTTTAGCATGGCACTTAAACTCTAATTGCGCCTGTAAGTCACTCAGgagaagagtgtctgctaaatgctTAAT
>XR_005036767.1
CCATACATAGGACCAGTGGGACCTCCAGGAAAAACCAAACCAGAGGTCCTCTTTGAATACTGTTGACTGACAGTGCTGGCGGGCTGGCAGGATGGATAGCATGACTGGCAGACACTGCTGGGGTGGCATGCCTCCACAGGCCGTGTAGAGTGCCAGCTTGCCCACAGGGATGCCCATGCCGTAGCAGCCCAGGTCCCCCAGGCCCAGGATCCTCTCTCCGTCTGTCACACACACCGCCTgtcaatcacatcacatcacacctgTCAATCATACCTTGCTGTCGGGGGGAGACGTTGACCCCATGATCctgagatgagggaggagaggtgtcCTCAGTGCCTCTGACACCTTTCCCCCGATCCCCTCACAACATCTGTACAGGGCCTCCAGCTCCTTCTCCATCCCTTAGGAACAGTACTGGTGTTATAATAGGACTTCAGTCACATCCCCTAGGCTGAAGAGAAAGGGGAAAGGGGTGAGATATTCCGTGAGAAGGGGGCGAGAGCTGAGCTTTCTCACCAAGAGTCTAATGGCCCCATACTCAGAATCATAGTACCTCTCAGAATCACCTCATCTGGATCTAGGTGTAAAAATAAAAGGTAATCTTGAGTGGAAGGAGACAATACTGTTTAACAATGTATATGAGAGATCAAATGTGTTAAAAATGCACACCTTGAGATTGATACAGAATGAAGTTGGTGAGGAGTGTTTGTGGAGTCTGTCTATAAGAACTTGAGCACTGATAGGTGGATGGTGTCCcaactgtcctgtgaggatccgaATAGGTCAGACCAGCTTTGCAATAAATAACTTCAACCAGACCCCCTCTCACCCGCAGAGGGGGGGGGACTGGTGGGGTTTGACAGCTCACACCCCGTTGTAAATCAAGGACAGAACACTCAGCATCTCTCTAAATTCACCCAAGGAATGTGCCTTTGTTTTAAGAAGATTTTCCACCAAAACTCTAACACGTTCAAAAgcaaatactggaacaatatttctaacatagaacgtggggaatatttctaacatagaacgAGGGGAATGGGCTTTGTGTTTTCTTGATTTGCTTACCTATTTAAGCTTGTGAAGCTCGCCCTTGTGTGTGCGGGATTATATTTTGTTCACGTCTTGTATCGGGGGTGTTATTGTGCTCCGGATCGTTgttaccctgtgttttgggttggtcagtgttttggccctgtgttttgggcatGTCAGTGTTTTggccctgtgttttgggcatGTCAGTGTTTTggccctgtgttttgggcatGTCAGTGTTTTggccctgtgttttgggcatGTCAGTGTTTTGCCCCTGTGTTTTGGGCATGTCAGTGTTTTGCCCCTGTGTTTTGGGCATGTCAGTGTTTTGCCCTGTGTTTTGGGCATGTCAGTGTTTTcgccctgtgttttgggcatGTCAGTGTTTTcgccctgtgttttgggcatGTCAGTGtttccgccctgtgttttgggctggtcagtgttttcgccctgtgttttgggcatGTCAGTGTTTTcgccctgtgttttgggcatGTCAGTGTTTTTGCCCTGTGTTTTGGGCATGTCAGTGTTTTTGCCCTGTGTTTTGGGCATGTCAGTGtttccgccctgtgttttgggctggtcagtgttttcgccctgtgttttgggcatGTCAGTGTTTTTGCCCTGTGTTTTGGGCATGTCAGTGTTTtcgccctgtgtttgggttggtcagtgttttcgccctgtgttttgggcatGACCATTTTTGTGCCTGGATTAAAGTGCATTTCTCCGTg
>XR_005036769.1
CCATACATAGGACCAGTGGGACCTCCAGGAAAAACCAAACCAGAGGTCCTCTTTGAATACTGTTGACTGACAGTGCTGGCGGGCTGGCAGGATGGATAGCATGACTGGCAGACACTGCTGGGGTGGCATGCCTCCACAGGCCGTGTAGAGTGCCAGCTTGCCCACAGGGATGCCCATGCCGTAGCAGCCCAGGTCCCCCAGGCCCAGGATCCTCTCTCCGTCTGTCACACACACCGCCTgtcaatcacatcacatcacacctgTCAATCATACCTGTCTGACCCGGTCCTGCTTCACACAACCTAACCATGCACTCTTATTAAACAGAAAACGACAAACGAATAGCCTGACGTTCTCAATGTGGAATTTACAAACTAACGATTGTGTAACTCAACCTGATCACCAGGGGTGTTTTGGAAGAAAAACAATTATTGTCCAGGAAATGTGTCTTTGG

Function

NR:

description
NADP-dependent malic enzyme

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036768.1 False 446 mRNA 0.52 3 42314091 42340473
XR_005036767.1 False 1793 mRNA 0.49 3 42322365 42340473
XR_005036769.1 True 454 mRNA 0.51 3 42339204 42340473

Neighbor

gene id symbol gene type direction distance location
LOC110489954 LOC106605048 coding downstream 90333 42217647 ~ 42223758 (-)
LOC110501561 LOC106605047 coding downstream 213796 42085411 ~ 42100295 (-)
LOC110489894 LOC106605044 coding downstream 283250 41994937 ~ 42030841 (-)
LOC110489886 LOC106605049 coding downstream 344141 41963722 ~ 41969950 (-)
LOC110489860 LOC106605053 coding downstream 583584 41714269 ~ 41730507 (-)
LOC110489971 LOC106605027 coding upstream 154993 42495466 ~ 42501897 (-)
LOC110489980 LOC106605028 coding upstream 169849 42510322 ~ 42517281 (-)
LOC118936750 NA coding upstream 345666 42686139 ~ 42687000 (-)
LOC110490045 LOC106605033 coding upstream 383605 42724078 ~ 42727549 (-)
LOC110490051 LOC106581764 coding upstream 438937 42779410 ~ 42792775 (-)
G144496 NA non-coding downstream 64063 42247891 ~ 42250028 (-)
G144459 LOC106605045 non-coding downstream 127973 42184844 ~ 42186118 (-)
G144428 NA non-coding downstream 175521 42138359 ~ 42138570 (-)
G144427 LOC106605043 non-coding downstream 175924 42136690 ~ 42138167 (-)
G144426 NA non-coding downstream 177514 42136370 ~ 42136577 (-)
G144604 NA non-coding upstream 45870 42386343 ~ 42386574 (-)
G144609 NA non-coding upstream 48163 42388636 ~ 42388837 (-)
G144621 NA non-coding upstream 57428 42397901 ~ 42398150 (-)
G144654 NA non-coding upstream 73244 42413717 ~ 42414002 (-)
G144941 NA non-coding upstream 248085 42588558 ~ 42592604 (-)
G142918 NA other downstream 1450370 40863214 ~ 40863721 (-)
LOC110489653 LOC106605072 other downstream 2072687 40224622 ~ 40298333 (-)
G141363 LOC106605077 other downstream 2548618 39763933 ~ 39765473 (-)
G140879 NA other downstream 3249673 39063862 ~ 39064418 (-)
G145010 NA other upstream 366345 42706818 ~ 42707279 (-)
G145767 NA other upstream 930244 43270717 ~ 43272516 (-)
LOC110490183 LOC106605015 other upstream 1032367 43372725 ~ 43392160 (-)
LOC110490298 LOC106605170 other upstream 1435590 43776063 ~ 43783884 (-)
LOC110490352 NA other upstream 2094317 44434790 ~ 44464449 (-)

Expression


Co-expression Network