LOC110489980 (LOC106605028)


Basic Information

Item Value
gene id LOC110489980
gene name LOC106605028
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42510322 ~ 42517281 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563025.2
TTGGCGATGGAGCTAGTGTACAACAAAAGCAGCAGAGGTCCCATAGGTGAAGACTGACCACCTCCAGAGAACCCATACATAGGCAAACCCGAGCAGCCGCCAACATGAGTCACAGCCCTGAGAGGATTTCGTCCTACCGACGCCACTTTGAGGACATCAGCAGCTCATCCTCCTACCAGGTTAGGGTGTCCAGCCCATCCCCAACCCTGAGAGTTAACCGCCACAAGTCAGCCAACTACTCGCCCAGTGCCGGAGCCAGCAGAATGCAGGCCCAGACCATGGGCAGAAGGACCGTCTCCACCTCACGTAACGCCCGCATGGCTGGCGGGAATGTGGGAACCATGGCATGTGTGGGCTATGGCAACGGGGCCCCGGTGGACCTGGACGCATCTGCTGCCGAGAACAAAGAATTCCTCAGCACGCGCAGTGGTGAACGGCAGGAGATGGTCGTATTGAACGACAGACTTGCTGTTTACATTGAGAAGGTTCGGTCCCTGGAGCAGCAGAACAAGCTGTTGGAGATGGAGATTGACGGCATCCAGAACCGGTTCGTGAAGCCGTCGGGCCTGCGCAAACTCTATGAAGATCAGCTGAGAGATCTGAAGAGGATTGCAGATCAGATGAGAAGGCAGCGGGACCAAGCTTTAGCCGGTAAAGAGGCCATGGCAGGTCAACTGGAGATAACCAAAGTCAAATACGAGGAGGCAGTTGAGCTGAGAAGGCGGGTCGAGATGGAGATAGAAGCATTCCGTCCGGATGTGGACCGAGCCACCTCTCAGCGCATCGCCCTGGAGAAACAGCTCGAGCAGTTGGAGGTGGAGATTGAATTCCTTCAGAGGGTGCACAAAGCGGAAATTGAAGAGCTACTGAAAATGATATATGCTGCCCATTCCTCAGCCCAGAGCGCTTATGACCTCCCCGACCTCTCAGGCGCTCTCAAACAAATCCAAGCTCAGTATGACGAAATTGCGGCAAAAAATCTACAGGAAATGGATTCCTGGTATAAAAGTAAATTTGAAGACCTGAACAACAAGACGACAAAACATGTGGATATGGTTCGAAGTGTCAGGGAAGAAGTTTCTGGCGCCAAGAAGGATATCCTAAACAAAGAGCGTGGCCTGGAAGCTCTGAAGACCAAGAATGAGGCTCTGGAGGCACAAGTTCGTGAAGCACAGGAAAAGTACAAGAGAGAGCTGGAGGATCTTCAGGCAAGAATTGAGGCCCTGAAGGAGGAGCTGAAATCCACCAAGTCGAAAATCGCTCTGCACCTGCGTGAATACCAGGACCTTCTGAACATGAAGATGGCTCTGGAGATTGAGATCACAACTTACAGGAAGCTGATTGAGGGTGAGAACTTGCGACTCACAACCATGGTTGGGACCATGTCCATAATGAGTAGCAGCTCAGGCTCCATGAGCGCTGGGATGAGTGTGGGCATGGCTAGAGGCATTGGACCTGGAGGCAGTGGTGGAGGAATGGGTGGAGCTGGAGGCTTAGGTGGAGGGATGGGTGCAGGAGGCATGGGTGCAGGAGGCCATGGCCCTGGAGGCAGGGTTGGAGCTGGAATCATGGGTGGTGGAGGAATGGGAGCTGGAGGAATTGGAGCCAAAGGCGTGGGTGCTGGAGGCGTGGGTGCTAGAGGCCTAGGAGCTGGAAGCACAGGTGCTGGAGGAATGGGTGGAGGCATGGATGGTGGAGGAATTGGTGCTATAGGCAATGGTGCTAAAGGCATGGGTGCTGGAGCCATGGGTCCTGGAGGCAATGGAGGAGGCATGGGAAATGGTGCAGGTGAATATGGGTACGGCACCTCCATGGAGTACTCCCACGAGGAGCAGGCAGTGGAGATGACGGAGAGGAGGACGGTGCTCATCAGAACAGTTAAATCAGAGGATGAGACACTGGAAAGCGACACAACGGAGCAAACCTACATAATCTCTGGCGCTGCCGATGACTCGGACGAGGAATAGGCGTGAATGACCATGTAACCTTCTCTCACCCCTTAACCCCTCACGCCCCTGGAGCTTTGCACTGACGGCTCATGTCTGGTCTCTGACCTTTGACCAAGACATGAGACCATGAATGACCCTGCAACCTAGTCAAGTAGTACCCTTTTGGCTCTTGTGATGTGCCTTTGAACCACATATTCAGAACCTCTGTGTGCATTACACAGCTACTCAACAAGCAGCAAATAAAGCTCTCAGCAATCAA
>XM_021563035.2
TTGGCGATGGAGCTAGTGTACAACAAAAGCAGCAGAGGTCCCATAGGTGAAGACTGACCACCTCCAGAGAACCCATACATAGGCAAACCCGAGCAGCCGCCAACATGAGTCACAGCCCTGAGAGGATTTCGTCCTACCGACGCCACTTTGAGGACATCAGCAGCTCATCCTCCTACCAGGTTAGGGTGTCCAGCCCATCCCCAACCCTGAGAGTTAACCGCCACAAGTCAGCCAACTACTCGCCCAGTGCCGGAGCCAGCAGAATGCAGGCCCAGACCATGGGCAGAAGGACCGTCTCCACCTCACGTAACGCCCGCATGGCTGGCGGGAATGTGGGAACCATGGCATGTGTGGGCTATGGCAACGGGGCCCCGGTGGACCTGGACGCATCTGCTGCCGAGAACAAAGAATTCCTCAGCACGCGCAGTGGTGAACGGCAGGAGATGGTCGTATTGAACGACAGACTTGCTGTTTACATTGAGAAGGTTCGGTCCCTGGAGCAGCAGAACAAGCTGTTGGAGATGGAGATTGACGGCATCCAGAACCGGTTCGTGAAGCCGTCGGGCCTGCGCAAACTCTATGAAGATCAGCTGAGAGATCTGAAGAGGATTGCAGATCAGATGAGAAGGCAGCGGGACCAAGCTTTAGCCGGTAAAGAGGCCATGGCAGGTCAACTGGAGATAACCAAAGTCAAATACGAGGAGGCAGTTGAGCTGAGAAGGCGGGTCGAGATGGAGATAGAAGCATTCCGTCCGGATGTGGACCGAGCCACCTCTCAGCGCATCGCCCTGGAGAAACAGCTCGAGCAGTTGGAGGTGGAGATTGAATTCCTTCAGAGGGTGCACAAAGCGGAAATTGAAGAGCTACTGAAAATGATATATGCTGCCCATTCCTCAGCCCAGAGCGCTTATGACCTCCCCGACCTCTCAGGCGCTCTCAAACAAATCCAAGCTCAGTATGACGAAATTGCGGCAAAAAATCTACAGGAAATGGATTCCTGGTATAAAAGTAAATTTGAAGACCTGAACAACAAGACGACAAAACATGTGGATATGGTTCGAAGTGTCAGGGAAGAAGTTTCTGGCGCCAAGAAGGATATCCTAAACAAAGAGCGTGGCCTGGAAGCTCTGAAGACCAAGAATGAGGCTCTGGAGGCACAAGTTCGTGAAGCACAGGAAAAGTACAAGAGAGAGCTGGAGGATCTTCAGGCAAGAATTGAGGCCCTGAAGGAGGAGCTGAAATCCACCAAGTCGAAAATCGCTCTGCACCTGCGTGAATACCAGGACCTTCTGAACATGAAGATGGCTCTGGAGATTGAGATCACAACTTACAGGAAGCTGATTGAGGGTGAGAACTTGCGACTCACAACCATGGTTGGGACCATGTCCATAATGAGTAGCAGCTCAGGCTCCATGAGCGCTGGGATGAGTGTGGGCATGGCTAGAGGCATTGGACCTGGAGGCAGTGGTGGAGGAATGGGTGGAGCTGGAGGCTTAGGTGGAGGGATGGGTGCAGGAGGCATGGGTGCAGGAGGCCATGGCCCTGGAGGCAGGGTTGGAGCTGGAATCATGGGTGGTGGAGGAATGGGAGCTGGAGGAATTGGAGCCAAAGGCGTGGGTGCTGGAGGCGTGGGTGCTAGAGGCCTAGGAGCTGGAAGCACAGGTGCTGGAGGAATGGGTGGAGGCATGGATGGTGGAGGAATTGGTGCTATAGGCAATGGTGCTAAAGGCATGGGTGCTGGAGCCATGGGTCCTGGAGGCAATGGAGGAGGCATGGGAAATGGTGCAGGTGAATATGGGTACGGCACCTCCATGGAGTACTCCCACGAGGAGCAGGCAGTGGAGATGACGGAGAGGAGGACGGTGCTCATCAGTTAAATCAGAGGATGAGACACTGGAAAGCGACACAACGGAGCAAACCTACATAATCTCTGGCGCTGCCGATGACTCGGACGAGGAATAGGCGTGAATGACCATGTAACCTTCTCTCACCCCTTAACCCCTCACGCCCCTGGAGCTTTGCACTGACGGCTCATGTCTGGTCTCTGACCTTTGACCAAGACATGAGACCATGAATGACCCTGCAACCTAGTCAAGTAGTACCCTTTTGGCTCTTGTGATGTGCCTTTGAACCACATATTCAGAACCTCTGTGTGCATTACACAGCTACTCAACAAGCAGCAAATAAAGCTCTCAGCAATCAA

Function

NR:

description
glial fibrillary acidic protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563025.2 False 2208 mRNA 0.54 11 42510322 42517281
XM_021563035.2 True 2203 mRNA 0.54 11 42510322 42517281

Neighbor

gene id symbol gene type direction distance location
LOC110489971 LOC106605027 coding downstream 8425 42495466 ~ 42501897 (-)
LOC118940237 NA coding downstream 169849 42314091 ~ 42340473 (-)
LOC110489954 LOC106605048 coding downstream 286564 42217647 ~ 42223758 (-)
LOC110501561 LOC106605047 coding downstream 410027 42085411 ~ 42100295 (-)
LOC110489894 LOC106605044 coding downstream 479481 41994937 ~ 42030841 (-)
LOC118936750 NA coding upstream 168858 42686139 ~ 42687000 (-)
LOC110490045 LOC106605033 coding upstream 206797 42724078 ~ 42727549 (-)
LOC110490051 LOC106581764 coding upstream 262129 42779410 ~ 42792775 (-)
LOC110501576 LOC106605029 coding upstream 405387 42922668 ~ 42962273 (-)
clec3ba tetn coding upstream 467128 42984409 ~ 42986551 (-)
G144654 NA non-coding downstream 96320 42413717 ~ 42414002 (-)
G144621 NA non-coding downstream 112172 42397901 ~ 42398150 (-)
G144609 NA non-coding downstream 121485 42388636 ~ 42388837 (-)
G144604 NA non-coding downstream 123748 42386343 ~ 42386574 (-)
G144496 NA non-coding downstream 260294 42247891 ~ 42250028 (-)
G144941 NA non-coding upstream 71277 42588558 ~ 42592604 (-)
G144968 LOC106605035 non-coding upstream 123218 42640499 ~ 42642693 (-)
G144995 NA non-coding upstream 164127 42681408 ~ 42683345 (-)
G145015 NA non-coding upstream 200453 42717734 ~ 42717959 (-)
G145019 NA non-coding upstream 203439 42720720 ~ 42720929 (-)
LOC110489860 LOC106605053 other downstream 779900 41714269 ~ 41730507 (-)
G142918 NA other downstream 1646601 40863214 ~ 40863721 (-)
LOC110489653 LOC106605072 other downstream 2268918 40224622 ~ 40298333 (-)
G141363 LOC106605077 other downstream 2744849 39763933 ~ 39765473 (-)
G140879 NA other downstream 3445904 39063862 ~ 39064418 (-)
G145010 NA other upstream 189537 42706818 ~ 42707279 (-)
G145767 NA other upstream 753436 43270717 ~ 43272516 (-)
LOC110490183 LOC106605015 other upstream 855559 43372725 ~ 43392160 (-)
LOC110490298 LOC106605170 other upstream 1258782 43776063 ~ 43783884 (-)
LOC110490352 NA other upstream 1917509 44434790 ~ 44464449 (-)

Expression


Co-expression Network